ambit2.pubchem

Class EntrezESearchParser

java.lang.Object

net.idea.modbcum.p.DefaultAmbitProcessor<InputStream,List<IStructureRecord>>

ambit2.pubchem.EntrezESearchParser

All Implemented Interfaces:

Serializable, net.idea.modbcum.i.processors.IProcessor<InputStream,List<IStructureRecord>>

public class EntrezESearchParser
extends net.idea.modbcum.p.DefaultAmbitProcessor<InputStream,List<IStructureRecord>>

Reads Entrez eSearch query result (DTD available at http://eutils.ncbi.nlm.nih.gov/entrez/query/DTD/eSearch_020511.dtd ) and returns List, where StructureRecord.getFormat() is equal to PubChemFormat

        1
        1
        0
        
                7474
        
        
        
        
                
                        100-00-5[All Fields]
                        All Fields
                        1
                        Y
                
                GROUP
        
        100-00-5[All Fields]

 

Author:

nina

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
protected static String	tag_ENTREZ_ErrorList
protected static String	tag_ENTREZ_esearch
protected static String	tag_ENTREZ_Id
protected static String	tag_ENTREZ_IdList
protected static String	tag_ENTREZ_PhraseNotFound

Fields inherited from class net.idea.modbcum.p.DefaultAmbitProcessor

enabled, logger, propertyChangeSupport

Constructor Summary

Constructors

Constructor and Description
EntrezESearchParser()

Method Summary

Modifier and Type	Method and Description
protected List<IStructureRecord>	parse(Document doc)
List<IStructureRecord>	process(InputStream target)

Methods inherited from class net.idea.modbcum.p.DefaultAmbitProcessor

addPropertyChangeListener, addPropertyChangeListener, close, getID, isEnabled, open, removePropertyChangeListener, removePropertyChangeListener, setEnabled, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

tag_ENTREZ_esearch

protected static final String tag_ENTREZ_esearch

See Also:

Constant Field Values

tag_ENTREZ_IdList

protected static final String tag_ENTREZ_IdList

See Also:

Constant Field Values

tag_ENTREZ_Id

protected static final String tag_ENTREZ_Id

See Also:

Constant Field Values

tag_ENTREZ_ErrorList

protected static final String tag_ENTREZ_ErrorList

See Also:

Constant Field Values

tag_ENTREZ_PhraseNotFound

protected static final String tag_ENTREZ_PhraseNotFound

See Also:

Constant Field Values

Constructor Detail

EntrezESearchParser

public EntrezESearchParser()

Method Detail

process

public List<IStructureRecord> process(InputStream target)
                               throws net.idea.modbcum.i.exceptions.AmbitException

Throws:

net.idea.modbcum.i.exceptions.AmbitException

parse

protected List<IStructureRecord> parse(Document doc)
                                throws ProcessorException

Throws:

ProcessorException