Package ambit2.pubchem

Interface Summary

Interface	Description
ResultListener<ResultType>

Class Summary

Class	Description
BatchRetrievePubChem
DepictRequest
EntrezESearchParser	Reads Entrez eSearch query result (DTD available at http://eutils.ncbi.nlm.nih.gov/entrez/query/DTD/eSearch_020511.dtd ) and returns List, where StructureRecord.getFormat() is equal to PubChemFormat
EntrezSearchOptions
EntrezSearchProcessor	Searches PubChem for structures given search terms (via Entrez) and returns SDF files.
HTTPRequest<Target,Result>
NCISearchProcessor	The general format of the URLS are http://cactus.nci.nih.gov/chemical/structure/{identifier}/{method} Allowed identifier values are: SMILES, Std.
PubchemFinder
PUGProcessor	Queries Pubchem Power User Gateway.
QuerySupport<Target,Result>	Executes a query.
SearchApplication

Enum Summary

Enum	Description
NCISearchProcessor.METHODS

Exception Summary

Exception	Description
FileNotFoundException
ServerError