ambit2.pubchem

Class SearchApplication

java.lang.Object

ambit2.pubchem.SearchApplication

public class SearchApplication
extends Object

Field Summary

Fields

Modifier and Type	Field and Description
protected int	timeout

Constructor Summary

Constructors

Constructor and Description
SearchApplication()

Method Summary

Modifier and Type	Method and Description
protected static org.apache.commons.cli.Options	createOptions()
protected static String	getEinecs(org.apache.commons.cli.CommandLine line)
protected static String	getFile(org.apache.commons.cli.CommandLine line)
protected static String	getHost(org.apache.commons.cli.CommandLine line)
protected static NCISearchProcessor.METHODS	getOutput(org.apache.commons.cli.CommandLine line)
protected static String	getQuery(org.apache.commons.cli.CommandLine line)
protected static boolean	getRetrieveConformers(org.apache.commons.cli.CommandLine line)
protected static boolean	getRetrieveSDF(org.apache.commons.cli.CommandLine line)
protected static String	getSource(org.apache.commons.cli.CommandLine line)
protected static int	getTimeout(org.apache.commons.cli.CommandLine line)
protected static long	getWait(org.apache.commons.cli.CommandLine line)
static void	main(String[] args)
void	processCactus(String file, String query, NCISearchProcessor.METHODS output, long wait, String host)
void	setTimeout(int ms)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

timeout

protected int timeout

Constructor Detail

SearchApplication

public SearchApplication()

Method Detail

setTimeout

public void setTimeout(int ms)

processCactus

public void processCactus(String file,
                          String query,
                          NCISearchProcessor.METHODS output,
                          long wait,
                          String host)

main

public static void main(String[] args)

getSource

protected static String getSource(org.apache.commons.cli.CommandLine line)

getEinecs

protected static String getEinecs(org.apache.commons.cli.CommandLine line)

getQuery

protected static String getQuery(org.apache.commons.cli.CommandLine line)

getOutput

protected static NCISearchProcessor.METHODS getOutput(org.apache.commons.cli.CommandLine line)

getFile

protected static String getFile(org.apache.commons.cli.CommandLine line)

getWait

protected static long getWait(org.apache.commons.cli.CommandLine line)

getTimeout

protected static int getTimeout(org.apache.commons.cli.CommandLine line)

getHost

protected static String getHost(org.apache.commons.cli.CommandLine line)

getRetrieveSDF

protected static boolean getRetrieveSDF(org.apache.commons.cli.CommandLine line)

getRetrieveConformers

protected static boolean getRetrieveConformers(org.apache.commons.cli.CommandLine line)

createOptions

protected static org.apache.commons.cli.Options createOptions()