Uses of Class
ambit2.reactions.GenericReaction

Packages that use GenericReaction

Package	Description
ambit2.reactions
ambit2.reactions.reactor
ambit2.reactions.retrosynth
ambit2.reactions.rules

Uses of GenericReaction in ambit2.reactions

Fields in ambit2.reactions declared as GenericReaction

Modifier and Type	Field and Description
GenericReaction	GenericReactionInstance.reaction

Fields in ambit2.reactions with type parameters of type GenericReaction

Modifier and Type	Field and Description
List<GenericReaction>	ReactionDataBase.excludedGenericReactions
List<GenericReaction>	ReactionDataBase.genericReactions

Methods in ambit2.reactions that return GenericReaction

Modifier and Type	Method and Description
GenericReaction	ReactionDataBase.getGenericReactionByID(int id)
static GenericReaction	GenericReaction.getReactionFromJsonNode(com.fasterxml.jackson.databind.JsonNode node)
static GenericReaction	GenericReaction.getReactionFromTokens(String[] tokens, Map<String,Integer> indices)

Constructors in ambit2.reactions with parameters of type GenericReaction

Constructor and Description
GenericReactionInstance(GenericReaction reaction, org.openscience.cdk.interfaces.IAtomContainer target, List<org.openscience.cdk.interfaces.IAtom> instanceAtoms)
GenericReactionInstance(GenericReaction reaction, org.openscience.cdk.interfaces.IAtomContainer target, List<org.openscience.cdk.interfaces.IAtom> instanceAtoms, org.openscience.cdk.interfaces.IAtomContainer products)

Uses of GenericReaction in ambit2.reactions.reactor

Fields in ambit2.reactions.reactor declared as GenericReaction

Modifier and Type	Field and Description
GenericReaction	ReactorInfoPack.reaction

Uses of GenericReaction in ambit2.reactions.retrosynth

Methods in ambit2.reactions.retrosynth that return GenericReaction

Modifier and Type	Method and Description
GenericReaction	ReactionSequenceStep.getReaction()

Methods in ambit2.reactions.retrosynth that return types with arguments of type GenericReaction

Modifier and Type	Method and Description
Map<GenericReaction,List<List<org.openscience.cdk.interfaces.IAtom>>>	ReactionSequence.generateAllReactionInstances(org.openscience.cdk.interfaces.IAtomContainer mol)
Map<GenericReaction,List<List<org.openscience.cdk.interfaces.IAtom>>>	ReactionSequence.generateAllReactionInstances(org.openscience.cdk.interfaces.IAtomContainer mol, List<GenericReaction> reactions)

Methods in ambit2.reactions.retrosynth with parameters of type GenericReaction

Modifier and Type	Method and Description
void	ReactionSequence.generateSequenceStepForReactionInstance(ReactionSequenceLevel level, int moleculeIndex, GenericReaction reaction, List<org.openscience.cdk.interfaces.IAtom> reactionInstance)
void	ReactionSequenceStep.setReaction(GenericReaction reaction)

Method parameters in ambit2.reactions.retrosynth with type arguments of type GenericReaction

Modifier and Type	Method and Description
Map<GenericReaction,List<List<org.openscience.cdk.interfaces.IAtom>>>	ReactionSequence.generateAllReactionInstances(org.openscience.cdk.interfaces.IAtomContainer mol, List<GenericReaction> reactions)
static Object[]	SyntheticStrategy.getRandomSelection(Map<GenericReaction,List<List<org.openscience.cdk.interfaces.IAtom>>> instances)
List<GenericReactionInstance>	ReactionSequence.handleReactionInstances(Map<GenericReaction,List<List<org.openscience.cdk.interfaces.IAtom>>> instances, org.openscience.cdk.interfaces.IAtomContainer target)

Uses of GenericReaction in ambit2.reactions.rules

Methods in ambit2.reactions.rules with parameters of type GenericReaction

Modifier and Type	Method and Description
static void	ReactionParser.parseReactionConditionsFromString(GenericReaction r, String condStr)