ambit2.rest.dataset

Class DatasetRDFWriter

java.lang.Object

net.idea.modbcum.p.DefaultAmbitProcessor<INPUT,OUTPUT>

ambit2.rest.dataset.AbstractStaxRDFWriter<IStructureRecord,IStructureRecord>

ambit2.rest.dataset.DatasetRDFWriter

All Implemented Interfaces:

Serializable, net.idea.modbcum.i.processors.IProcessor<IStructureRecord,IStructureRecord>

public class DatasetRDFWriter
extends AbstractStaxRDFWriter<IStructureRecord,IStructureRecord>

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
protected Comparator<Property>	comp
protected CompoundURIReporter<net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>>	compoundReporter
protected String	datasetIndividual
protected Profile	groupProperties
protected List<Property>	header
protected String	licenseURI
protected PropertyURIReporter	propertyReporter
protected Template	template

Fields inherited from class ambit2.rest.dataset.AbstractStaxRDFWriter

dc, dcterms, ot, output, owl, rdf, uriReporter

Fields inherited from class net.idea.modbcum.p.DefaultAmbitProcessor

enabled, logger, propertyChangeSupport

Constructor Summary

Constructors

Constructor and Description
DatasetRDFWriter(CompoundURIReporter<net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>> compoundReporter, PropertyURIReporter propertyReporter)
DatasetRDFWriter(CompoundURIReporter<net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>> compoundReporter, PropertyURIReporter propertyReporter, net.idea.restnet.db.QueryURIReporter<IStructureRecord,net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>> uriReporter)
DatasetRDFWriter(org.restlet.data.Reference baseReference, net.idea.restnet.c.ResourceDoc doc)
DatasetRDFWriter(org.restlet.Request request, net.idea.restnet.c.ResourceDoc doc)

Method Summary

Modifier and Type	Method and Description
void	close()
protected String	createDatasetURI(int datasetID)
void	footer(XMLStreamWriter writer)
CompoundURIReporter<net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>>	getCompoundReporter()
String	getDatasetIndividual()
Profile	getGroupProperties()
String	getLicenseURI()
PropertyURIReporter	getPropertyReporter()
Template	getTemplate()
void	header(XMLStreamWriter writer) xmlns:ac="http://apps.ideaconsult.net:8080/ambit2/compound/" xmlns:ot="http://www.opentox.org/api/1.1#" xmlns:bx="http://purl.org/net/nknouf/ns/bibtex#" xmlns:otee="http://www.opentox.org/echaEndpoints.owl#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:ar="http://apps.ideaconsult.net:8080/ambit2/reference/" xmlns="http://apps.ideaconsult.net:8080/ambit2/" xmlns:am="http://apps.ideaconsult.net:8080/ambit2/model/" xmlns:af="http://apps.ideaconsult.net:8080/ambit2/feature/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:ad="http://apps.ideaconsult.net:8080/ambit2/dataset/" xmlns:ag="http://apps.ideaconsult.net:8080/ambit2/algorithm/" xmlns:owl="http://www.w3.org/2002/07/owl#" xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:ota="http://www.opentox.org/algorithmTypes.owl#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xml:base="http://apps.ideaconsult.net:8080/ambit2/">
IStructureRecord	process(IStructureRecord item)
void	setCompoundReporter(CompoundURIReporter<net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>> compoundReporter)
void	setDatasetIndividual(String datasetIndividual)
void	setGroupProperties(Profile gp)
void	setLicenseURI(String licenseURI)
void	setPropertyReporter(PropertyURIReporter propertyReporter)
void	setTemplate(Template template)
protected List<Property>	template2Header(Template template, boolean propertiesOnly)
protected String	writeHasSource(Property item)

Methods inherited from class ambit2.rest.dataset.AbstractStaxRDFWriter

getOutput, getUriReporter, setOutput, setUriReporter, writeAnnotationPropertyTriple, writeClassTriple, writeDataPropertyTriple, writeObjectPropertyTriple

Methods inherited from class net.idea.modbcum.p.DefaultAmbitProcessor

addPropertyChangeListener, addPropertyChangeListener, getID, isEnabled, open, removePropertyChangeListener, removePropertyChangeListener, setEnabled, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

datasetIndividual

protected String datasetIndividual

header

protected List<Property> header

propertyReporter

protected PropertyURIReporter propertyReporter

compoundReporter

protected CompoundURIReporter<net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>> compoundReporter

comp

protected Comparator<Property> comp

groupProperties

protected Profile groupProperties

licenseURI

protected String licenseURI

template

protected Template template

Constructor Detail

DatasetRDFWriter

public DatasetRDFWriter(org.restlet.data.Reference baseReference,
                        net.idea.restnet.c.ResourceDoc doc)

DatasetRDFWriter

public DatasetRDFWriter(org.restlet.Request request,
                        net.idea.restnet.c.ResourceDoc doc)

DatasetRDFWriter

public DatasetRDFWriter(CompoundURIReporter<net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>> compoundReporter,
                        PropertyURIReporter propertyReporter)

DatasetRDFWriter

public DatasetRDFWriter(CompoundURIReporter<net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>> compoundReporter,
                        PropertyURIReporter propertyReporter,
                        net.idea.restnet.db.QueryURIReporter<IStructureRecord,net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>> uriReporter)

Method Detail

getLicenseURI

public String getLicenseURI()

setLicenseURI

public void setLicenseURI(String licenseURI)

getGroupProperties

public Profile getGroupProperties()

setGroupProperties

public void setGroupProperties(Profile gp)

getTemplate

public Template getTemplate()

setTemplate

public void setTemplate(Template template)

getCompoundReporter

public CompoundURIReporter<net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>> getCompoundReporter()

setCompoundReporter

public void setCompoundReporter(CompoundURIReporter<net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>> compoundReporter)

getPropertyReporter

public PropertyURIReporter getPropertyReporter()

setPropertyReporter

public void setPropertyReporter(PropertyURIReporter propertyReporter)

getDatasetIndividual

public String getDatasetIndividual()

setDatasetIndividual

public void setDatasetIndividual(String datasetIndividual)

process

public IStructureRecord process(IStructureRecord item)
                         throws net.idea.modbcum.i.exceptions.AmbitException

Throws:

net.idea.modbcum.i.exceptions.AmbitException

createDatasetURI

protected String createDatasetURI(int datasetID)

header

public void header(XMLStreamWriter writer)

Description copied from class: AbstractStaxRDFWriter

xmlns:ac="http://apps.ideaconsult.net:8080/ambit2/compound/" xmlns:ot="http://www.opentox.org/api/1.1#" xmlns:bx="http://purl.org/net/nknouf/ns/bibtex#" xmlns:otee="http://www.opentox.org/echaEndpoints.owl#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:ar="http://apps.ideaconsult.net:8080/ambit2/reference/" xmlns="http://apps.ideaconsult.net:8080/ambit2/" xmlns:am="http://apps.ideaconsult.net:8080/ambit2/model/" xmlns:af="http://apps.ideaconsult.net:8080/ambit2/feature/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:ad="http://apps.ideaconsult.net:8080/ambit2/dataset/" xmlns:ag="http://apps.ideaconsult.net:8080/ambit2/algorithm/" xmlns:owl="http://www.w3.org/2002/07/owl#" xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:ota="http://www.opentox.org/algorithmTypes.owl#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xml:base="http://apps.ideaconsult.net:8080/ambit2/">

Overrides:

header in class AbstractStaxRDFWriter<IStructureRecord,IStructureRecord>

footer

public void footer(XMLStreamWriter writer)

Overrides:

footer in class AbstractStaxRDFWriter<IStructureRecord,IStructureRecord>

writeHasSource

protected String writeHasSource(Property item)
                         throws Exception

Parameters:

item -

Returns:

Throws:

Exception

template2Header

protected List<Property> template2Header(Template template,
                                         boolean propertiesOnly)

close

public void close()

Specified by:

close in interface net.idea.modbcum.i.processors.IProcessor<IStructureRecord,IStructureRecord>

Overrides:

close in class net.idea.modbcum.p.DefaultAmbitProcessor<IStructureRecord,IStructureRecord>