ambit2.rest.legacy

Class OTModel

java.lang.Object

ambit2.rest.legacy.OTObject

ambit2.rest.legacy.OTProcessingResource

ambit2.rest.legacy.OTModel

All Implemented Interfaces:

IOTModel, IOTObject, Serializable, Comparable<OTObject>

Direct Known Subclasses:

OTSuperModel

Deprecated.

@Deprecated
public class OTModel
extends OTProcessingResource
implements IOTModel

Implementation of OpenTox API ://opentox.org/dev/apis/api-1.1/Model

Author:

nina

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
protected OTAlgorithm	algorithm Deprecated.
protected String	creator Deprecated.
protected OTFeatures	dependentVariables Deprecated.
protected String	endpointName Deprecated.
protected String	endpointURI Deprecated.
protected OTFeatures	independentVariables Deprecated.
protected OTFeatures	predictedVariables Deprecated.
protected boolean	supportsPredictedVarURI Deprecated.
protected OTDataset	trainingData Deprecated.

Fields inherited from class ambit2.rest.legacy.OTProcessingResource

referer

Fields inherited from class ambit2.rest.legacy.OTObject

dataset_service, forbidden, form, name, pollInterval, pollTimeout, selected, service, uri

Constructor Summary

Constructors

Constructor and Description
OTModel(String ref, String referer) Deprecated.

Method Summary

Modifier and Type	Method and Description
OTDataset	calculateDescriptors(OTDataset inputDataset) Deprecated. Identify which descriptors are used as independent variables and have valid ot:algorithm entry and run the calculations
OTDataset	calculateDescriptors(OTFeatures features, OTDataset inputDataset) Deprecated. Run descriptor calculations for specified set of features
OTAlgorithm	getAlgorithm() Deprecated.
String	getCreator() Deprecated.
OTFeatures	getDependentVariables() Deprecated.
String	getEndpointName() Deprecated.
String	getEndpointURI() Deprecated.
OTFeatures	getIndependentVariables() Deprecated. Independent variables
OTFeatures	getPredictedVariables() Deprecated. Predicted variables
static String	getSparql(String name) Deprecated.
OTDataset	getTrainingDataset() Deprecated.
boolean	isSupportsPredictedVarURI() Deprecated.
OTModel	load() Deprecated.
OTModel	load(net.idea.restnet.rdf.ns.OT.OTProperty[] varTypes, String referer) Deprecated. Reads RDF and initializes variables
static OTModel	model(String datasetURI, String referer) Deprecated.
OTDataset	predict(OTDataset subsetToCalculate) Deprecated.
OTDataset	process(OTDataset inputDataset) Deprecated. Synchronous processing
OTRemoteTask	processAsync(OTDataset inputDataset) Deprecated. Initiate asyncronous processing of the dataset
String	report(String ontologyURI) Deprecated.
void	setEndpointName(String endpointName) Deprecated.
void	setEndpointURI(String endpointURI) Deprecated.
void	setSupportsPredictedVarURI(boolean supportsPredictedVarURI) Deprecated.
OTDataset	subsetWithoutPredictedValues(OTDataset inputDataset) Deprecated.
OTObject	withAlgorithm(String url) Deprecated.
OTObject	withCreator(String name) Deprecated.
OTModel	withDatasetService(org.restlet.data.Reference uri) Deprecated. Specify which dataset service to use for results
OTModel	withDatasetService(String uri) Deprecated. Specify which dataset service to use for results
OTModel	withParams(org.restlet.data.Form form) Deprecated.
OTModel	withParams(String name, String value) Deprecated.
OTObject	withTrainingData(String url) Deprecated.

Methods inherited from class ambit2.rest.legacy.OTProcessingResource

taskResults, tasksCompleted

Methods inherited from class ambit2.rest.legacy.OTObject

compareTo, create, delete, equals, get, getDataset_service, getName, getPage, getPagedReference, getUri, isForbidden, isSelected, object, object, post, post, put, readTextLineAsName, send, send, setName, setSelected, toString, wait, withName

Methods inherited from class java.lang.Object

clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface ambit2.rest.legacy.IOTObject

get, getName, getPage, getUri, isForbidden, isSelected, setSelected, withName

Field Detail

endpointName

protected String endpointName

Deprecated.

supportsPredictedVarURI

protected boolean supportsPredictedVarURI

Deprecated.

endpointURI

protected String endpointURI

Deprecated.

independentVariables

protected OTFeatures independentVariables

Deprecated.

creator

protected String creator

Deprecated.

trainingData

protected OTDataset trainingData

Deprecated.

algorithm

protected OTAlgorithm algorithm

Deprecated.

dependentVariables

protected OTFeatures dependentVariables

Deprecated.

predictedVariables

protected OTFeatures predictedVariables

Deprecated.

Constructor Detail

OTModel

public OTModel(String ref,
               String referer)

Deprecated.

Method Detail

isSupportsPredictedVarURI

public boolean isSupportsPredictedVarURI()

Deprecated.

setSupportsPredictedVarURI

public void setSupportsPredictedVarURI(boolean supportsPredictedVarURI)

Deprecated.

getEndpointName

public String getEndpointName()

Deprecated.

setEndpointName

public void setEndpointName(String endpointName)

Deprecated.

getEndpointURI

public String getEndpointURI()

Deprecated.

setEndpointURI

public void setEndpointURI(String endpointURI)

Deprecated.

getIndependentVariables

public OTFeatures getIndependentVariables()

Deprecated.

Description copied from interface: IOTModel

Independent variables

Specified by:

getIndependentVariables in interface IOTModel

Returns:

getDependentVariables

public OTFeatures getDependentVariables()

Deprecated.

getPredictedVariables

public OTFeatures getPredictedVariables()

Deprecated.

Description copied from interface: IOTModel

Predicted variables

Specified by:

getPredictedVariables in interface IOTModel

Returns:

model

public static OTModel model(String datasetURI,
                            String referer)
                     throws Exception

Deprecated.

Throws:

Exception

withCreator

public OTObject withCreator(String name)

Deprecated.

getCreator

public String getCreator()

Deprecated.

withAlgorithm

public OTObject withAlgorithm(String url)

Deprecated.

getAlgorithm

public OTAlgorithm getAlgorithm()

Deprecated.

withTrainingData

public OTObject withTrainingData(String url)

Deprecated.

getTrainingDataset

public OTDataset getTrainingDataset()

Deprecated.

load

public OTModel load()
             throws Exception

Deprecated.

Throws:

Exception

load

public OTModel load(net.idea.restnet.rdf.ns.OT.OTProperty[] varTypes,
                    String referer)
             throws Exception

Deprecated.

Reads RDF and initializes variables

Returns:

Throws:

Exception

calculateDescriptors

public OTDataset calculateDescriptors(OTDataset inputDataset)
                               throws Exception

Deprecated.

Description copied from interface: IOTModel

Identify which descriptors are used as independent variables and have valid ot:algorithm entry and run the calculations

Specified by:

calculateDescriptors in interface IOTModel

Returns:

dataset with calculated descriptors

Throws:

Exception

calculateDescriptors

public OTDataset calculateDescriptors(OTFeatures features,
                                      OTDataset inputDataset)
                               throws Exception

Deprecated.

Description copied from interface: IOTModel

Run descriptor calculations for specified set of features

Specified by:

calculateDescriptors in interface IOTModel

Returns:

Throws:

Exception

subsetWithoutPredictedValues

public OTDataset subsetWithoutPredictedValues(OTDataset inputDataset)
                                       throws Exception

Deprecated.

Specified by:

subsetWithoutPredictedValues in interface IOTModel

Throws:

Exception

process

public OTDataset process(OTDataset inputDataset)
                  throws Exception

Deprecated.

Description copied from interface: IOTModel

Synchronous processing

Specified by:

process in interface IOTModel

Overrides:

process in class OTProcessingResource

Returns:

Throws:

Exception

predict

public OTDataset predict(OTDataset subsetToCalculate)
                  throws Exception

Deprecated.

Throws:

Exception

processAsync

public OTRemoteTask processAsync(OTDataset inputDataset)
                          throws Exception

Deprecated.

Description copied from interface: IOTModel

Initiate asyncronous processing of the dataset

Specified by:

processAsync in interface IOTModel

Overrides:

processAsync in class OTProcessingResource

Returns:

Throws:

Exception

withDatasetService

public OTModel withDatasetService(org.restlet.data.Reference uri)
                           throws Exception

Deprecated.

Description copied from interface: IOTModel

Specify which dataset service to use for results

Specified by:

withDatasetService in interface IOTModel

Returns:

Throws:

Exception

withDatasetService

public OTModel withDatasetService(String uri)
                           throws Exception

Deprecated.

Description copied from interface: IOTModel

Specify which dataset service to use for results

Specified by:

withDatasetService in interface IOTModel

Returns:

Throws:

Exception

getSparql

public static String getSparql(String name)
                        throws Exception

Deprecated.

Throws:

Exception

withParams

public OTModel withParams(org.restlet.data.Form form)
                   throws Exception

Deprecated.

Overrides:

withParams in class OTObject

Throws:

Exception

withParams

public OTModel withParams(String name,
                          String value)
                   throws Exception

Deprecated.

Overrides:

withParams in class OTObject

Throws:

Exception

report

public String report(String ontologyURI)
              throws Exception

Deprecated.

Throws:

Exception