ambit2.rest.model.predictor

Class FingerprintsPredictor

java.lang.Object

net.idea.modbcum.p.DefaultAmbitProcessor<Target,Result>

net.idea.modbcum.p.AbstractDBProcessor<NativeTypeItem,IStructureRecord>

ambit2.rest.model.predictor.ModelPredictor<DataCoverage,Input>

ambit2.rest.model.predictor.CoveragePredictor<IStructureRecord,List<BitSet>>

ambit2.rest.model.predictor.FingerprintsPredictor

All Implemented Interfaces:

IStructureDiagramDepiction<BufferedImage>, IStructureDiagramHighlights, Serializable, net.idea.modbcum.i.IDBProcessor<IStructureRecord,IStructureRecord>, net.idea.modbcum.i.processors.IProcessor<IStructureRecord,IStructureRecord>

public class FingerprintsPredictor
extends CoveragePredictor<IStructureRecord,List<BitSet>>

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
protected List<BitSet>	bitsets
protected FingerprintGenerator	fpgen
protected MoleculeReader	reader

Fields inherited from class ambit2.rest.model.predictor.ModelPredictor

applicationRootReference, classIndex, filter, header, imageSize, model, modelReporter, propertyReporter, record, structureRequired, targetURI, valuesRequired

Fields inherited from class net.idea.modbcum.p.AbstractDBProcessor

closeConnection, connection

Fields inherited from class net.idea.modbcum.p.DefaultAmbitProcessor

enabled, logger, propertyChangeSupport

Constructor Summary

Constructors

Constructor and Description
FingerprintsPredictor(org.restlet.data.Reference applicationRootReference, ModelQueryResults model, ModelURIReporter modelReporter, PropertyURIReporter propertyReporter, String[] targetURI)

Method Summary

Modifier and Type	Method and Description
String	getCompoundURL(IStructureRecord target)
protected boolean	isSupported(Object predictor)
IStructureRecord	process(IStructureRecord target)
protected List<BitSet>	transform(IStructureRecord target)

Methods inherited from class ambit2.rest.model.predictor.CoveragePredictor

assignResults, predict, toString

Methods inherited from class ambit2.rest.model.predictor.ModelPredictor

createPredictor, createResultReference, extractRecordID, getClassIndex, getHeader, getImage, getImage, getImageSize, getLegend, getModel, getModelReporter, getPredictor, getPropertyReporter, isStructureRequired, isValuesRequired, open, setImageSize, setModelReporter, setPropertyReporter, setStructureRequired, setValuesRequired, writeMessages

Methods inherited from class net.idea.modbcum.p.AbstractDBProcessor

close, getConnection, isCloseConnection, isEnabled, setCloseConnection, setConnection

Methods inherited from class net.idea.modbcum.p.DefaultAmbitProcessor

addPropertyChangeListener, addPropertyChangeListener, getID, removePropertyChangeListener, removePropertyChangeListener, setEnabled

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface net.idea.modbcum.i.processors.IProcessor

getID, setEnabled

Field Detail

fpgen

protected FingerprintGenerator fpgen

reader

protected MoleculeReader reader

bitsets

protected List<BitSet> bitsets

Constructor Detail

FingerprintsPredictor

public FingerprintsPredictor(org.restlet.data.Reference applicationRootReference,
                             ModelQueryResults model,
                             ModelURIReporter modelReporter,
                             PropertyURIReporter propertyReporter,
                             String[] targetURI)
                      throws org.restlet.resource.ResourceException

Throws:

org.restlet.resource.ResourceException

Method Detail

getCompoundURL

public String getCompoundURL(IStructureRecord target)
                      throws net.idea.modbcum.i.exceptions.AmbitException

Specified by:

getCompoundURL in class ModelPredictor<DataCoverage,IStructureRecord>

Throws:

net.idea.modbcum.i.exceptions.AmbitException

transform

protected List<BitSet> transform(IStructureRecord target)
                          throws net.idea.modbcum.i.exceptions.AmbitException

Specified by:

transform in class CoveragePredictor<IStructureRecord,List<BitSet>>

Throws:

net.idea.modbcum.i.exceptions.AmbitException

isSupported

protected boolean isSupported(Object predictor)
                       throws org.restlet.resource.ResourceException

Overrides:

isSupported in class ModelPredictor<DataCoverage,IStructureRecord>

Returns:

true if this is the expected object type,

Throws:

org.restlet.resource.ResourceException

process

public IStructureRecord process(IStructureRecord target)
                         throws net.idea.modbcum.i.exceptions.AmbitException

Specified by:

process in interface net.idea.modbcum.i.processors.IProcessor<IStructureRecord,IStructureRecord>

Overrides:

process in class ModelPredictor<DataCoverage,IStructureRecord>

Throws:

net.idea.modbcum.i.exceptions.AmbitException