ambit2.rest.rdf

Class RDFStructuresIterator

java.lang.Object

ambit2.rest.rdf.RDFObjectIterator<Item>

ambit2.rest.rdf.RDFDataEntryIterator<IStructureRecord,Property>

ambit2.rest.rdf.RDFStructuresIterator

All Implemented Interfaces:

Iterator<IStructureRecord>

public class RDFStructuresIterator
extends RDFDataEntryIterator<IStructureRecord,Property>

Parses RDF representation of OpenTox dataset into IStructureRecord

Author:

nina

Field Summary

Fields

Modifier and Type	Field and Description
protected Hashtable<String,Property>	lookup
protected RDFPropertyIterator	propertyIterator

Fields inherited from class ambit2.rest.rdf.RDFDataEntryIterator

conformerTemplate, featureTemplate

Fields inherited from class ambit2.rest.rdf.RDFObjectIterator

baseReference, forceReadRDFLocalObjects, iterateSubjects, jenaModel, mediaType, record, recordIterator, reference, referer, template, topObject

Constructor Summary

Constructors

Constructor and Description
RDFStructuresIterator(InputStream in, org.restlet.data.MediaType mediaType)
RDFStructuresIterator(com.hp.hpl.jena.rdf.model.Model model)
RDFStructuresIterator(com.hp.hpl.jena.rdf.model.Model model, com.hp.hpl.jena.rdf.model.StmtIterator recordIterator)
RDFStructuresIterator(org.restlet.data.Reference reference, org.restlet.data.MediaType mediaType, String referer)
RDFStructuresIterator(org.restlet.data.Reference reference, String referer)
RDFStructuresIterator(org.restlet.representation.Representation representation, org.restlet.data.MediaType mediaType)

Method Summary

Modifier and Type	Method and Description
protected Property	createFeature(com.hp.hpl.jena.rdf.model.RDFNode feature)
protected IStructureRecord	createRecord()
protected void	parseFeatureURI(String uri, Property property)
protected void	parseFeatureValues(com.hp.hpl.jena.rdf.model.Resource dataEntry, IStructureRecord record)
boolean	readStructure(com.hp.hpl.jena.rdf.model.RDFNode target, IStructureRecord record)
protected void	setFeatureValue(IStructureRecord record, Property key, com.hp.hpl.jena.rdf.model.RDFNode value)
protected void	setIDChemical(int idchemical)
protected void	setIDConformer(int idstructure)

Methods inherited from class ambit2.rest.rdf.RDFDataEntryIterator

createTemplate, parseObjectURI, parseRecord

Methods inherited from class ambit2.rest.rdf.RDFObjectIterator

close, createResource, getBaseReference, getCreator, getJenaModel, getMediaType, getPropertyNode, getPropertyValue, getTemplate, getTitle, getURI, hasNext, isCloseModel, isForceReadRDFLocalObjects, isIterateSubjects, next, remove, removeDatasetFragment, setBaseReference, setCloseModel, setForceReadRDFLocalObjects, setIterateSubjects, setMediaType, skip

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Iterator

forEachRemaining

Field Detail

lookup

protected Hashtable<String,Property> lookup

propertyIterator

protected RDFPropertyIterator propertyIterator

Constructor Detail

RDFStructuresIterator

public RDFStructuresIterator(org.restlet.representation.Representation representation,
                             org.restlet.data.MediaType mediaType)
                      throws org.restlet.resource.ResourceException

Throws:

org.restlet.resource.ResourceException

RDFStructuresIterator

public RDFStructuresIterator(org.restlet.data.Reference reference,
                             String referer)
                      throws org.restlet.resource.ResourceException,
                             MalformedURLException,
                             IOException

Throws:

org.restlet.resource.ResourceException

MalformedURLException

IOException

RDFStructuresIterator

public RDFStructuresIterator(org.restlet.data.Reference reference,
                             org.restlet.data.MediaType mediaType,
                             String referer)
                      throws org.restlet.resource.ResourceException,
                             MalformedURLException,
                             IOException

Throws:

org.restlet.resource.ResourceException

MalformedURLException

IOException

RDFStructuresIterator

public RDFStructuresIterator(InputStream in,
                             org.restlet.data.MediaType mediaType)
                      throws org.restlet.resource.ResourceException,
                             MalformedURLException,
                             IOException

Throws:

org.restlet.resource.ResourceException

MalformedURLException

IOException

RDFStructuresIterator

public RDFStructuresIterator(com.hp.hpl.jena.rdf.model.Model model,
                             com.hp.hpl.jena.rdf.model.StmtIterator recordIterator)

RDFStructuresIterator

public RDFStructuresIterator(com.hp.hpl.jena.rdf.model.Model model)

Method Detail

createFeature

protected Property createFeature(com.hp.hpl.jena.rdf.model.RDFNode feature)

Specified by:

createFeature in class RDFDataEntryIterator<IStructureRecord,Property>

parseFeatureURI

protected void parseFeatureURI(String uri,
                               Property property)

Specified by:

parseFeatureURI in class RDFDataEntryIterator<IStructureRecord,Property>

readStructure

public boolean readStructure(com.hp.hpl.jena.rdf.model.RDFNode target,
                             IStructureRecord record)

Specified by:

readStructure in class RDFDataEntryIterator<IStructureRecord,Property>

setFeatureValue

protected void setFeatureValue(IStructureRecord record,
                               Property key,
                               com.hp.hpl.jena.rdf.model.RDFNode value)

Specified by:

setFeatureValue in class RDFDataEntryIterator<IStructureRecord,Property>

setIDChemical

protected void setIDChemical(int idchemical)

Specified by:

setIDChemical in class RDFDataEntryIterator<IStructureRecord,Property>

setIDConformer

protected void setIDConformer(int idstructure)

Specified by:

setIDConformer in class RDFDataEntryIterator<IStructureRecord,Property>

createRecord

protected IStructureRecord createRecord()

Specified by:

createRecord in class RDFObjectIterator<IStructureRecord>

parseFeatureValues

protected void parseFeatureValues(com.hp.hpl.jena.rdf.model.Resource dataEntry,
                                  IStructureRecord record)

Overrides:

parseFeatureValues in class RDFDataEntryIterator<IStructureRecord,Property>