ambit2.sln

Class SLNParser

java.lang.Object

ambit2.sln.SLNParser

public class SLNParser
extends Object

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	SLNParser.ParserState

Field Summary

Fields

Modifier and Type	Field and Description
int	maxCompNumber
int	numFragments

Constructor Summary

Constructors

Constructor and Description
SLNParser()
SLNParser(SLNDictionary globalDictionary)

Method Summary

Modifier and Type	Method and Description
void	analyzeAtomExpression(String atomExpr)
void	analyzeBondExpression(String bondExpr)
String	getErrorMessages()
ArrayList<SLNParserError>	getErrors()
boolean	getFlagAllowBondExpressionInRingClosure()
boolean	getFlagTolerateSpaces()
SLNDictionary	getGlobalDictionary()
void	handleLocalDictionary()
boolean	isFlagUseSimpleMacroAtomsInDictionary()
boolean	isFlagUseTypeAsStandardAtomAttribute()
SLNContainer	parse(String sln)
ISLNDictionaryObject	parseDictionaryObject(String dictObjectString)
ISLNDictionaryObject	parseMacroAtomDictionaryObject(String dictObjectString, boolean parseName)
ISLNDictionaryObject	parseMarkushDictionaryObject(String dictObjectString)
SLNSubstance	parseSLNSubstance(String sln)
void	setFlagAllowBondExpressionInRingClosure(boolean flagAllowBondExpressionInRingClosure)
void	setFlagTolerateSpaces(boolean tolerateSpaces)
void	setFlagUseSimpleMacroAtomsInDictionary(boolean flagUseSimpleMacroAtomsInDictionary)
void	setFlagUseTypeAsStandardAtomAttribute(boolean flagUseTypeAsStandardAtomAttribute)
void	setGlobalDictionary(SLNDictionary globalDictionary)
int	setPredefinedGlobalDictionary()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

numFragments

public int numFragments

maxCompNumber

public int maxCompNumber

Constructor Detail

SLNParser

public SLNParser()

SLNParser

public SLNParser(SLNDictionary globalDictionary)

Method Detail

setPredefinedGlobalDictionary

public int setPredefinedGlobalDictionary()

getFlagTolerateSpaces

public boolean getFlagTolerateSpaces()

setFlagTolerateSpaces

public void setFlagTolerateSpaces(boolean tolerateSpaces)

setFlagAllowBondExpressionInRingClosure

public void setFlagAllowBondExpressionInRingClosure(boolean flagAllowBondExpressionInRingClosure)

getFlagAllowBondExpressionInRingClosure

public boolean getFlagAllowBondExpressionInRingClosure()

isFlagUseSimpleMacroAtomsInDictionary

public boolean isFlagUseSimpleMacroAtomsInDictionary()

setFlagUseSimpleMacroAtomsInDictionary

public void setFlagUseSimpleMacroAtomsInDictionary(boolean flagUseSimpleMacroAtomsInDictionary)

isFlagUseTypeAsStandardAtomAttribute

public boolean isFlagUseTypeAsStandardAtomAttribute()

setFlagUseTypeAsStandardAtomAttribute

public void setFlagUseTypeAsStandardAtomAttribute(boolean flagUseTypeAsStandardAtomAttribute)

getGlobalDictionary

public SLNDictionary getGlobalDictionary()

setGlobalDictionary

public void setGlobalDictionary(SLNDictionary globalDictionary)

parse

public SLNContainer parse(String sln)

parseSLNSubstance

public SLNSubstance parseSLNSubstance(String sln)

handleLocalDictionary

public void handleLocalDictionary()

analyzeAtomExpression

public void analyzeAtomExpression(String atomExpr)

getErrorMessages

public String getErrorMessages()

getErrors

public ArrayList<SLNParserError> getErrors()

analyzeBondExpression

public void analyzeBondExpression(String bondExpr)

parseDictionaryObject

public ISLNDictionaryObject parseDictionaryObject(String dictObjectString)

parseMacroAtomDictionaryObject

public ISLNDictionaryObject parseMacroAtomDictionaryObject(String dictObjectString,
                                                           boolean parseName)

parseMarkushDictionaryObject

public ISLNDictionaryObject parseMarkushDictionaryObject(String dictObjectString)