ambit2.sln

Class SLNContainer

java.lang.Object

org.openscience.cdk.isomorphism.matchers.QueryChemObject

org.openscience.cdk.isomorphism.matchers.QueryAtomContainer

ambit2.sln.SLNContainer

All Implemented Interfaces:

Cloneable, org.openscience.cdk.interfaces.IAtomContainer, org.openscience.cdk.interfaces.ICDKObject, org.openscience.cdk.interfaces.IChemObject, org.openscience.cdk.interfaces.IChemObjectListener, org.openscience.cdk.isomorphism.matchers.IQueryAtomContainer

public class SLNContainer
extends org.openscience.cdk.isomorphism.matchers.QueryAtomContainer

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	SLNContainer.SLNObjectType

Field Summary

Fields inherited from class org.openscience.cdk.isomorphism.matchers.QueryAtomContainer

atomCount, atoms, bondCount, bonds, growArraySize, lonePairCount, lonePairs, singleElectronCount, singleElectrons, stereoElements

Constructor Summary

Constructors

Constructor and Description
SLNContainer(org.openscience.cdk.interfaces.IChemObjectBuilder builder)

Method Summary

Modifier and Type	Method and Description
boolean	checkIsStructureOnly()
List<Integer>	get1basedAtomIndicesCountingHAtoms()
SLNContainerAttributes	getAttributes()
SLNDictionary	getGlobalDictionary()
boolean	getIsStructureOnly()
SLNDictionary	getLocalDictionary()
SLNContainer.SLNObjectType	getSlnObjectType()
int[]	getValenceAtomIndices()
boolean	isFlagHasDictionaryObjects()
boolean	isFlagNeedsContainerExpansionForQueryMatch()
void	recognizeSlnObjectType()
void	setAttributes(SLNContainerAttributes attributes)
void	setGlobalDictionary(SLNDictionary dict)
void	setIsStructureOnly(boolean IsStructureOnly)
void	setLocalDictionary(SLNDictionary dict)

Methods inherited from class org.openscience.cdk.isomorphism.matchers.QueryAtomContainer

add, addAtom, addBond, addBond, addBond, addElectronContainer, addLonePair, addLonePair, addSingleElectron, addSingleElectron, addStereoElement, atoms, bonds, clone, contains, contains, contains, contains, contains, electronContainers, getAtom, getAtomCount, getAtomNumber, getBond, getBond, getBondCount, getBondNumber, getBondNumber, getBondOrderSum, getConnectedAtomsCount, getConnectedAtomsList, getConnectedBondsCount, getConnectedBondsCount, getConnectedBondsList, getConnectedElectronContainersList, getConnectedLonePairsCount, getConnectedLonePairsList, getConnectedSingleElectronsCount, getConnectedSingleElectronsList, getElectronContainer, getElectronContainerCount, getFirstAtom, getLastAtom, getLonePair, getLonePairCount, getLonePairNumber, getMaximumBondOrder, getMinimumBondOrder, getSingleElectron, getSingleElectronCount, getSingleElectronNumber, getTitle, indexOf, indexOf, indexOf, indexOf, isEmpty, lonePairs, remove, removeAllBonds, removeAllElectronContainers, removeAllElements, removeAtom, removeAtom, removeAtomAndConnectedElectronContainers, removeAtomOnly, removeAtomOnly, removeBond, removeBond, removeBond, removeElectronContainer, removeElectronContainer, removeLonePair, removeLonePair, removeSingleElectron, removeSingleElectron, setAtom, setAtoms, setBonds, setStereoElements, setTitle, singleElectrons, stateChanged, stereoElements, toString

Methods inherited from class org.openscience.cdk.isomorphism.matchers.QueryChemObject

addListener, addProperties, getBuilder, getFlag, getFlags, getFlagValue, getID, getListenerCount, getNotification, getProperties, getProperty, getProperty, matches, notifyChanged, notifyChanged, removeListener, removeProperty, setFlag, setFlags, setID, setNotification, setProperties, setProperty

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.openscience.cdk.interfaces.IChemObject

addListener, addProperties, getFlag, getFlags, getFlagValue, getID, getListenerCount, getNotification, getProperties, getProperty, getProperty, notifyChanged, notifyChanged, removeListener, removeProperty, setFlag, setFlags, setID, setNotification, setProperties, setProperty

Methods inherited from interface org.openscience.cdk.interfaces.ICDKObject

getBuilder

Constructor Detail

SLNContainer

public SLNContainer(org.openscience.cdk.interfaces.IChemObjectBuilder builder)

Method Detail

getAttributes

public SLNContainerAttributes getAttributes()

setAttributes

public void setAttributes(SLNContainerAttributes attributes)

getIsStructureOnly

public boolean getIsStructureOnly()

setIsStructureOnly

public void setIsStructureOnly(boolean IsStructureOnly)

checkIsStructureOnly

public boolean checkIsStructureOnly()

getLocalDictionary

public SLNDictionary getLocalDictionary()

getGlobalDictionary

public SLNDictionary getGlobalDictionary()

setLocalDictionary

public void setLocalDictionary(SLNDictionary dict)

setGlobalDictionary

public void setGlobalDictionary(SLNDictionary dict)

getSlnObjectType

public SLNContainer.SLNObjectType getSlnObjectType()

isFlagHasDictionaryObjects

public boolean isFlagHasDictionaryObjects()

isFlagNeedsContainerExpansionForQueryMatch

public boolean isFlagNeedsContainerExpansionForQueryMatch()

recognizeSlnObjectType

public void recognizeSlnObjectType()

getValenceAtomIndices

public int[] getValenceAtomIndices()

get1basedAtomIndicesCountingHAtoms

public List<Integer> get1basedAtomIndicesCountingHAtoms()