Uses of Class
ambit2.smarts.IsomorphismTester

Packages that use IsomorphismTester

Package	Description
ambit2.groupcontribution
ambit2.groupcontribution.correctionfactors
ambit2.groupcontribution.io
ambit2.reactions.fragmentation
ambit2.reactions.rules.conditions
ambit2.smarts	SMARTS parser
ambit2.smarts.groups
ambit2.smarts.processors
ambit2.smarts.query	Ambit implementation of SMARTS parser
ambit2.tautomers.rules

Uses of IsomorphismTester in ambit2.groupcontribution

Constructors in ambit2.groupcontribution with parameters of type IsomorphismTester

Constructor and Description
GCMParser(SmartsParser parser, IsomorphismTester isoTester)

Uses of IsomorphismTester in ambit2.groupcontribution.correctionfactors

Constructors in ambit2.groupcontribution.correctionfactors with parameters of type IsomorphismTester

Constructor and Description
AtomPairCorrectionFactor(String smarts1, String smarts2, int distance, SmartsParser parser, IsomorphismTester isoTester)
AtomPairCorrectionFactor(String smarts1, String smarts2, int distance, SmartsParser parser, IsomorphismTester isoTester, IValueTransformation transformation)
AtomPairCorrectionFactor(String smarts1, String smarts2, SmartsParser parser, IsomorphismTester isoTester)
SmartsCorrectionFactor(String smarts, SmartsParser parser, IsomorphismTester isoTester)
SmartsCorrectionFactor(String smarts, SmartsParser parser, IsomorphismTester isoTester, IValueTransformation transformation)
SmartsCorrectionFactor(String smarts, SmartsParser parser, IsomorphismTester isoTester, SmartsConst.SSM_MODE flagSSMode, IValueTransformation transformation)

Uses of IsomorphismTester in ambit2.groupcontribution.io

Constructors in ambit2.groupcontribution.io with parameters of type IsomorphismTester

Constructor and Description
GCM2Json(IsomorphismTester isoTester, SmartsParser parser)

Uses of IsomorphismTester in ambit2.reactions.fragmentation

Fields in ambit2.reactions.fragmentation declared as IsomorphismTester

Modifier and Type	Field and Description
IsomorphismTester	FragmentationRule.isoTester

Constructors in ambit2.reactions.fragmentation with parameters of type IsomorphismTester

Constructor and Description
FragmentationRule(String smarts, org.openscience.cdk.isomorphism.matchers.IQueryAtomContainer query, IsomorphismTester isoTester)

Uses of IsomorphismTester in ambit2.reactions.rules.conditions

Constructors in ambit2.reactions.rules.conditions with parameters of type IsomorphismTester

Constructor and Description
ReactionGroupCondition(ReactionGroupCondition.RGConditionType conditionType, String smarts, SmartsParser parser, IsomorphismTester isoTester)

Uses of IsomorphismTester in ambit2.smarts

Fields in ambit2.smarts declared as IsomorphismTester

Modifier and Type	Field and Description
protected IsomorphismTester	SMIRKSManager.isoTester

Methods in ambit2.smarts that return IsomorphismTester

Modifier and Type	Method and Description
IsomorphismTester	SMIRKSManager.getIsomorphismTester()

Uses of IsomorphismTester in ambit2.smarts.groups

Methods in ambit2.smarts.groups that return IsomorphismTester

Modifier and Type	Method and Description
IsomorphismTester	GroupMatch.getIsoTester()

Constructors in ambit2.smarts.groups with parameters of type IsomorphismTester

Constructor and Description
GroupMatch(String smarts, SmartsParser parser, IsomorphismTester isoTester)

Uses of IsomorphismTester in ambit2.smarts.processors

Fields in ambit2.smarts.processors declared as IsomorphismTester

Modifier and Type	Field and Description
protected IsomorphismTester	StructureKeysBitSetGenerator.isoTester

Uses of IsomorphismTester in ambit2.smarts.query

Fields in ambit2.smarts.query declared as IsomorphismTester

Modifier and Type	Field and Description
protected IsomorphismTester	FastSmartsMatcher.isoTester

Uses of IsomorphismTester in ambit2.tautomers.rules

Methods in ambit2.tautomers.rules with parameters of type IsomorphismTester

Modifier and Type	Method and Description
boolean	AtomCondition.checkConditionForAtom(org.openscience.cdk.interfaces.IAtomContainer mol, int targetAtNum, IsomorphismTester isoTester)