Uses of Class
ambit2.smarts.SmartsAtomExpression

Packages that use SmartsAtomExpression

Package	Description
ambit2.smarts	SMARTS parser
ambit2.smarts.groups
ambit2.smarts.smirks

Uses of SmartsAtomExpression in ambit2.smarts

Fields in ambit2.smarts with type parameters of type SmartsAtomExpression

Modifier and Type	Field and Description
List<SmartsAtomExpression>	SMIRKSReaction.productRecursiveAtoms
List<SmartsAtomExpression>	SMIRKSReaction.reactantRecursiveAtoms

Methods in ambit2.smarts that return types with arguments of type SmartsAtomExpression

Modifier and Type	Method and Description
List<SmartsAtomExpression>	SMIRKSManager.getRecursiveAtoms(org.openscience.cdk.isomorphism.matchers.IQueryAtomContainer query)
static List<SmartsAtomExpression>	SmartsToChemObject.getSubExpressions(SmartsAtomExpression a, int separator)
static List<SmartsAtomExpression>	StereoFromSmartsAtomExpression.getSubExpressions(SmartsAtomExpression a, int separator)

Methods in ambit2.smarts with parameters of type SmartsAtomExpression

Modifier and Type	Method and Description
void	SmartsToChemObject.analyzeSubExpressionsFromLowAnd(SmartsAtomExpression atExp, SmartsAtomExpression sub)
static int	StereoFromSmartsAtomExpression.analyzeSubExpressionsFromLowAnd(SmartsAtomExpression atExp, SmartsAtomExpression sub)
static String	SmartsHelper.getAtomExpressionTokens(SmartsAtomExpression expression)
static int	StereoFromSmartsAtomExpression.getExpressionAtomChirality(SmartsAtomExpression atExp, SmartsAtomExpression sub)
int	SmartsToChemObject.getExpressionAtomType(SmartsAtomExpression atExp, SmartsAtomExpression sub)
int	SmartsToChemObject.getRecursiveExpressionAtomType(SmartsAtomExpression atExp, int n)
static int	StereoFromSmartsAtomExpression.getStereo(SmartsAtomExpression a)
static List<SmartsAtomExpression>	SmartsToChemObject.getSubExpressions(SmartsAtomExpression a, int separator)
static List<SmartsAtomExpression>	StereoFromSmartsAtomExpression.getSubExpressions(SmartsAtomExpression a, int separator)
org.openscience.cdk.interfaces.IAtom	SmartsToChemObject.smartsExpressionToAtom(SmartsAtomExpression a) This function tries to convert the SmartsAtomExpression to a IAtom with defined atom type.

Method parameters in ambit2.smarts with type arguments of type SmartsAtomExpression

Modifier and Type	Method and Description
void	SMIRKSManager.mapRecursiveAtomsAgainstTarget(List<SmartsAtomExpression> recursiveAtoms, org.openscience.cdk.interfaces.IAtomContainer target)

Uses of SmartsAtomExpression in ambit2.smarts.groups

Methods in ambit2.smarts.groups that return types with arguments of type SmartsAtomExpression

Modifier and Type	Method and Description
List<SmartsAtomExpression>	GroupMatch.getRecursiveAtoms(org.openscience.cdk.isomorphism.matchers.IQueryAtomContainer query)

Method parameters in ambit2.smarts.groups with type arguments of type SmartsAtomExpression

Modifier and Type	Method and Description
void	GroupMatch.mapRecursiveAtomsAgainstTarget(List<SmartsAtomExpression> recursiveAtoms, org.openscience.cdk.interfaces.IAtomContainer target)

Uses of SmartsAtomExpression in ambit2.smarts.smirks

Methods in ambit2.smarts.smirks with parameters of type SmartsAtomExpression

Modifier and Type	Method and Description
static int	HAtomManager.getHAtoms(SmartsAtomExpression a)