| Package | Description |
|---|---|
| ambit2.groupcontribution | |
| ambit2.groupcontribution.correctionfactors | |
| ambit2.groupcontribution.io | |
| ambit2.reactions.rules.conditions | |
| ambit2.smarts |
SMARTS parser |
| ambit2.smarts.groups | |
| ambit2.smarts.query |
Ambit implementation of SMARTS parser
|
| ambit2.tautomers.rules |
| Constructor and Description |
|---|
GCMParser(SmartsParser parser,
IsomorphismTester isoTester) |
| Constructor and Description |
|---|
AtomPairCorrectionFactor(String smarts1,
String smarts2,
int distance,
SmartsParser parser,
IsomorphismTester isoTester) |
AtomPairCorrectionFactor(String smarts1,
String smarts2,
int distance,
SmartsParser parser,
IsomorphismTester isoTester,
IValueTransformation transformation) |
AtomPairCorrectionFactor(String smarts1,
String smarts2,
SmartsParser parser,
IsomorphismTester isoTester) |
SmartsCorrectionFactor(String smarts,
SmartsParser parser,
IsomorphismTester isoTester) |
SmartsCorrectionFactor(String smarts,
SmartsParser parser,
IsomorphismTester isoTester,
IValueTransformation transformation) |
SmartsCorrectionFactor(String smarts,
SmartsParser parser,
IsomorphismTester isoTester,
SmartsConst.SSM_MODE flagSSMode,
IValueTransformation transformation) |
| Constructor and Description |
|---|
GCM2Json(IsomorphismTester isoTester,
SmartsParser parser) |
| Constructor and Description |
|---|
ReactionGroupCondition(ReactionGroupCondition.RGConditionType conditionType,
String smarts,
SmartsParser parser,
IsomorphismTester isoTester) |
| Modifier and Type | Field and Description |
|---|---|
protected SmartsParser |
SMIRKSManager.parser |
| Modifier and Type | Method and Description |
|---|---|
SmartsParser |
SMIRKSManager.getSmartsParser() |
| Modifier and Type | Method and Description |
|---|---|
SmartsParser |
GroupMatch.getParser() |
| Constructor and Description |
|---|
GroupMatch(String smarts,
SmartsParser parser,
IsomorphismTester isoTester) |
| Modifier and Type | Field and Description |
|---|---|
protected SmartsParser |
FastSmartsMatcher.sp |
| Modifier and Type | Method and Description |
|---|---|
void |
AtomCondition.makeSmartsQueries(SmartsParser sp) |
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