Rule (Ambit 2 4.0.1-SNAPSHOT API)

java.lang.Object
- ambit2.tautomers.Rule

```
public class Rule
extends Object
```

Field Summary

Fields
Modifier and Type	Field and Description
`int`	`HAtomMode`
`boolean[]`	`isMobileH`
`boolean`	`isRuleActive`
`boolean`	`isStandardRule`
`String`	`mobileGroup`
`int[][]`	`mobileGroupPos`
`String`	`name`
`int`	`nMobileGroups`
`int`	`nStates`
`String`	`OriginalRuleString`
`RankingRule`	`rankingRule`
`int`	`ringClosureBondFA`
`int`	`ringClosureBondNum`
`org.openscience.cdk.interfaces.IBond.Order`	`ringClosureBondOrder`
`int`	`ringClosureBondSA`
`int`	`ringClosureState`
`String`	`RuleInfo`
`String[]`	`smartsStates`
`RuleStateBondDistribution[]`	`stateBonds`
`RuleStateFlags[]`	`stateFlags`
`org.openscience.cdk.isomorphism.matchers.IQueryAtomContainer[]`	`stateQueries`
`int`	`type`

Constructor Summary

Constructors
Constructor and Description

Rule()

Constructors
Constructor and Description
`Rule()`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`List<IRuleInstance>`	`applyRule(org.openscience.cdk.interfaces.IAtomContainer mol)`
`String`	`toString()`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

HAtomMode
```
public int HAtomMode
```

name
```
public String name
```

type
```
public int type
```

mobileGroup
```
public String mobileGroup
```

nStates
```
public int nStates
```

smartsStates
```
public String[] smartsStates
```

stateFlags
```
public RuleStateFlags[] stateFlags
```

stateBonds

public RuleStateBondDistribution[] stateBonds

nMobileGroups
```
public int nMobileGroups
```

isMobileH
```
public boolean[] isMobileH
```

isStandardRule
```
public boolean isStandardRule
```

isRuleActive
```
public boolean isRuleActive
```

mobileGroupPos
```
public int[][] mobileGroupPos
```

RuleInfo
```
public String RuleInfo
```

stateQueries

public org.openscience.cdk.isomorphism.matchers.IQueryAtomContainer[] stateQueries

OriginalRuleString
```
public String OriginalRuleString
```

rankingRule
```
public RankingRule rankingRule
```

ringClosureState
```
public int ringClosureState
```

ringClosureBondNum
```
public int ringClosureBondNum
```

ringClosureBondFA
```
public int ringClosureBondFA
```

ringClosureBondSA
```
public int ringClosureBondSA
```

ringClosureBondOrder

public org.openscience.cdk.interfaces.IBond.Order ringClosureBondOrder

Constructor Detail
- Rule
```
public Rule()
```

Method Detail

applyRule

public List<IRuleInstance> applyRule(org.openscience.cdk.interfaces.IAtomContainer mol)
                              throws Exception

Throws:: Exception

toString
```
public String toString()
```
Overrides:

toString in class Object

Class Rule

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

HAtomMode

name

type

mobileGroup

nStates

smartsStates

stateFlags

stateBonds

nMobileGroups

isMobileH

isStandardRule

isRuleActive

mobileGroupPos

RuleInfo

stateQueries

OriginalRuleString

rankingRule

ringClosureState

ringClosureBondNum

ringClosureBondFA

ringClosureBondSA

ringClosureBondOrder

Constructor Detail

Rule

Method Detail

applyRule

toString