ambit2.tautomers

Class RuleInstance

java.lang.Object

ambit2.tautomers.RuleInstance

All Implemented Interfaces:

IRuleInstance

public class RuleInstance
extends Object
implements IRuleInstance

Field Summary

Fields

Modifier and Type	Field and Description
List<org.openscience.cdk.interfaces.IAtom>	atoms
int	beginState
List<org.openscience.cdk.interfaces.IBond>	bonds
CombinedRuleInstance	combRI
int	curState
org.openscience.cdk.interfaces.IAtom	explicitH
boolean	FlagGoToStateSpecialOK
boolean	FlagImplicitH
boolean	FlagOverlapMode
int	foundState
protected static Logger	logger
org.openscience.cdk.interfaces.IAtom	mobileAtom
org.openscience.cdk.interfaces.IAtomContainer	molecule
Rule	rule

Constructor Summary

Constructors

Constructor and Description
RuleInstance()
RuleInstance(RuleInstance prevRI)

Method Summary

Modifier and Type	Method and Description
int	checkCurStateInstanceValidity()
String	debugInfo(org.openscience.cdk.interfaces.IAtomContainer mol)
int	firstState()
List<org.openscience.cdk.interfaces.IAtom>	getAtoms()
int	getCurrentState()
int	getNumberOfStates()
Rule	getRule()
int	nextState()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

logger

protected static Logger logger

rule

public Rule rule

combRI

public CombinedRuleInstance combRI

molecule

public org.openscience.cdk.interfaces.IAtomContainer molecule

foundState

public int foundState

curState

public int curState

beginState

public int beginState

FlagImplicitH

public boolean FlagImplicitH

explicitH

public org.openscience.cdk.interfaces.IAtom explicitH

mobileAtom

public org.openscience.cdk.interfaces.IAtom mobileAtom

FlagOverlapMode

public boolean FlagOverlapMode

FlagGoToStateSpecialOK

public boolean FlagGoToStateSpecialOK

atoms

public List<org.openscience.cdk.interfaces.IAtom> atoms

bonds

public List<org.openscience.cdk.interfaces.IBond> bonds

Constructor Detail

RuleInstance

public RuleInstance()

RuleInstance

public RuleInstance(RuleInstance prevRI)

Method Detail

getRule

public Rule getRule()

Specified by:

getRule in interface IRuleInstance

firstState

public int firstState()

Specified by:

firstState in interface IRuleInstance

nextState

public int nextState()

Specified by:

nextState in interface IRuleInstance

getCurrentState

public int getCurrentState()

Specified by:

getCurrentState in interface IRuleInstance

getNumberOfStates

public int getNumberOfStates()

Specified by:

getNumberOfStates in interface IRuleInstance

checkCurStateInstanceValidity

public int checkCurStateInstanceValidity()

getAtoms

public List<org.openscience.cdk.interfaces.IAtom> getAtoms()

Specified by:

getAtoms in interface IRuleInstance

debugInfo

public String debugInfo(org.openscience.cdk.interfaces.IAtomContainer mol)