ambit2.tautomers

Class RuleManager

java.lang.Object

ambit2.tautomers.RuleManager

public class RuleManager
extends Object

Field Summary

Fields

Modifier and Type	Field and Description
protected static Logger	logger

Constructor Summary

Constructors

Constructor and Description
RuleManager(TautomerManager man)

Method Summary

Modifier and Type	Method and Description
double	calculateRank(TautomerIncrementStep incStep, org.openscience.cdk.interfaces.IAtomContainer tautomer)
static double	calculateRank(TautomerIncrementStep incStep, org.openscience.cdk.interfaces.IAtomContainer tautomer, TautomerManager tman)
String	debugStack()
static double	getAdditionalAromaticityRank(org.openscience.cdk.interfaces.IAtomContainer ac)
static int	getNumOfOverlappedAtoms(RuleInstance r1, RuleInstance r2)
static boolean	overlaps(RuleInstance r, List<IRuleInstance> group)
static boolean	overlaps(RuleInstance r1, RuleInstance r2)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

logger

protected static final Logger logger

Constructor Detail

RuleManager

public RuleManager(TautomerManager man)

Method Detail

overlaps

public static boolean overlaps(RuleInstance r1,
                               RuleInstance r2)

overlaps

public static boolean overlaps(RuleInstance r,
                               List<IRuleInstance> group)

getNumOfOverlappedAtoms

public static int getNumOfOverlappedAtoms(RuleInstance r1,
                                          RuleInstance r2)

debugStack

public String debugStack()
                  throws Exception

Throws:

Exception

calculateRank

public double calculateRank(TautomerIncrementStep incStep,
                            org.openscience.cdk.interfaces.IAtomContainer tautomer)
                     throws Exception

Throws:

Exception

calculateRank

public static double calculateRank(TautomerIncrementStep incStep,
                                   org.openscience.cdk.interfaces.IAtomContainer tautomer,
                                   TautomerManager tman)
                            throws Exception

Throws:

Exception

getAdditionalAromaticityRank

public static double getAdditionalAromaticityRank(org.openscience.cdk.interfaces.IAtomContainer ac)