ambit2.core.io
Class FilesWithHeaderWriter

java.lang.Object
  org.openscience.cdk.io.DefaultChemObjectWriter
      ambit2.core.io.FilesWithHeaderWriter

All Implemented Interfaces:

org.openscience.cdk.io.IChemObjectIO, org.openscience.cdk.io.IChemObjectWriter

Direct Known Subclasses:

DelimitedFileWriter, PDFWriter

public abstract class FilesWithHeaderWriter
extends org.openscience.cdk.io.DefaultChemObjectWriter

Field Summary

static java.lang.String	defaultSMILESHeader
protected java.util.ArrayList	header
protected static org.openscience.cdk.tools.LoggingTool	logger
protected int	smilesIndex
protected boolean	writingStarted

Constructor Summary

FilesWithHeaderWriter()

Method Summary

java.util.ArrayList	getHeader()
void	setHeader(java.util.ArrayList header)
void	setHeader(java.util.Map properties) Creates header from Hashtable keys Used for default header - created from properties of the first molecule written
protected abstract void	writeHeader()

Methods inherited from class org.openscience.cdk.io.DefaultChemObjectWriter

addChemObjectIOListener, fireIOSettingQuestion, getIOSettings, removeChemObjectIOListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.openscience.cdk.io.IChemObjectWriter

setWriter, setWriter, write

Methods inherited from interface org.openscience.cdk.io.IChemObjectIO

accepts, close, getFormat

Field Detail

logger

protected static org.openscience.cdk.tools.LoggingTool logger

defaultSMILESHeader

public static java.lang.String defaultSMILESHeader

header

protected java.util.ArrayList header

writingStarted

protected boolean writingStarted

smilesIndex

protected int smilesIndex

Constructor Detail

FilesWithHeaderWriter

public FilesWithHeaderWriter()

Method Detail

getHeader

public java.util.ArrayList getHeader()

Returns:

Returns the header.

setHeader

public void setHeader(java.util.Map properties)

Creates header from Hashtable keys Used for default header - created from properties of the first molecule written

Parameters:

properties -

writeHeader

protected abstract void writeHeader()
                             throws java.io.IOException

Throws:

java.io.IOException

setHeader

public void setHeader(java.util.ArrayList header)

Parameters:

header - The header to set.