AMBIT
AMBIT REST web services
Support
AMBIT publications
Project Documentation
Dataset comparison demo
Methodology
- Use an OpenTox algorithm of type Applicability domain, which calculates similarity to a dataset. The algorithm accepts the Dataset to compare with via HTTP POST command
curl -X POST http://HOST:port/ambit2/algorithm/thealgorithm -d "dataset_uri=the-dataset" -i
and builds an OpenTox http://HOST:port/ambit2/model/mymodel
- The model can be used to calculate similarity of any new compound/dataset to the Dataset to compare with via POST command to the model:
curl -X POST http://HOST:port/ambit2/model/mymodel -d "dataset_uri=any-dataset" -i
Results
The cURL command returns URI of an OpenTox dataset with predictions. The results are stored under model predicted variables (as for any OpenTox model),
Comparison with other datasets
A histogram of the Tanimoto distances of ECHA Preregistration list
A histogram of the Tanimoto distances of PubChem
A histogram of the Tanimoto distances of NTPBSI dataset
A histogram of the Tanimoto distances of Benchmark Data Set for In Silico Prediction of Ames Mutagenicity dataset
A histogram of the Tanimoto distances of EPI_Kowwin dataset
A histogram of the Tanimoto distances of ISSCAN dataset
A histogram of the Tanimoto distances of CPDBAS dataset
A histogram of the Tanimoto distances of FDAMDD dataset
A histogram of the Tanimoto distances of TOXCAST Phase II dataset
A histogram of the Tanimoto distances of TOXCAST Phase I dataset
A histogram of the Tanimoto distances of IRISTR dataset
A histogram of the Tanimoto distances of EPAFHM dataset
