Uses of Interface
ambit2.base.data.ILiteratureEntry

Packages that use ILiteratureEntry

Package	Description
ambit2.base.data	Base data structures; no chemistry.
ambit2.base.data.substance	Chemical substances, with complex composition (including nanomaterials)
ambit2.base.interfaces	Format independent IO utilities
ambit2.base.relation.composition	Classes to describe chemical composition
ambit2.core.io	Input output support.
ambit2.core.io.dx
ambit2.core.io.json
ambit2.core.io.study
ambit2.db.processors
ambit2.db.update.reference
ambit2.rest.rdf

Uses of ILiteratureEntry in ambit2.base.data

Classes in ambit2.base.data that implement ILiteratureEntry

Modifier and Type	Class and Description
class	LiteratureEntry A Literature entry: title, URL

Fields in ambit2.base.data declared as ILiteratureEntry

Modifier and Type	Field and Description
protected ILiteratureEntry	Property.reference
protected ILiteratureEntry	SourceDataset.reference
protected ILiteratureEntry	StructureRecord.reference

Methods in ambit2.base.data that return ILiteratureEntry

Modifier and Type	Method and Description
ILiteratureEntry	Property.getReference()
ILiteratureEntry	SourceDataset.getReference()
ILiteratureEntry	StructureRecord.getReference()

Methods in ambit2.base.data with parameters of type ILiteratureEntry

Modifier and Type	Method and Description
static Property	Property.getInstance(String name, ILiteratureEntry reference)
void	Property.setReference(ILiteratureEntry reference)
void	SourceDataset.setReference(ILiteratureEntry reference)
void	StructureRecord.setReference(ILiteratureEntry reference)

Constructors in ambit2.base.data with parameters of type ILiteratureEntry

Constructor and Description
Property(String name, ILiteratureEntry reference)
Property(String name, String units, ILiteratureEntry reference)
SourceDataset(String name, ILiteratureEntry reference)

Uses of ILiteratureEntry in ambit2.base.data.substance

Constructors in ambit2.base.data.substance with parameters of type ILiteratureEntry

Constructor and Description
SubstanceEndpointsBundle(String name, ILiteratureEntry reference)
SubstanceProperty(String topcategory, String endpointCategory, String name, String units, ILiteratureEntry reference)
SubstancePropertyCategory(String topcategory, String endpointCategory, String name, String units, ILiteratureEntry reference)

Uses of ILiteratureEntry in ambit2.base.interfaces

Methods in ambit2.base.interfaces that return ILiteratureEntry

Modifier and Type	Method and Description
ILiteratureEntry	ICiteable.getReference()
ILiteratureEntry	IStructureRecord.getReference()

Methods in ambit2.base.interfaces with parameters of type ILiteratureEntry

Modifier and Type	Method and Description
void	ICiteable.setReference(ILiteratureEntry reference)
void	IStructureRecord.setReference(ILiteratureEntry reference)

Uses of ILiteratureEntry in ambit2.base.relation.composition

Methods in ambit2.base.relation.composition that return ILiteratureEntry

Modifier and Type	Method and Description
ILiteratureEntry	CompositionRelation.getReference()

Methods in ambit2.base.relation.composition with parameters of type ILiteratureEntry

Modifier and Type	Method and Description
void	CompositionRelation.setReference(ILiteratureEntry reference)

Uses of ILiteratureEntry in ambit2.core.io

Fields in ambit2.core.io declared as ILiteratureEntry

Modifier and Type	Field and Description
protected ILiteratureEntry	I5ReaderSimple.reference
protected ILiteratureEntry	RawIteratingCSVReader.reference
protected ILiteratureEntry	RawIteratingReader.reference
protected ILiteratureEntry	RawIteratingWrapper.reference

Methods in ambit2.core.io that return ILiteratureEntry

Modifier and Type	Method and Description
ILiteratureEntry	I5ReaderSimple.getReference()
ILiteratureEntry	RawIteratingCSVReader.getReference()
ILiteratureEntry	RawIteratingReader.getReference()
ILiteratureEntry	RawIteratingWrapper.getReference()

Methods in ambit2.core.io with parameters of type ILiteratureEntry

Modifier and Type	Method and Description
void	I5ReaderSimple.setReference(ILiteratureEntry reference)
void	RawIteratingCSVReader.setReference(ILiteratureEntry reference)
void	RawIteratingReader.setReference(ILiteratureEntry reference)
void	RawIteratingWrapper.setReference(ILiteratureEntry reference)

Uses of ILiteratureEntry in ambit2.core.io.dx

Methods in ambit2.core.io.dx with parameters of type ILiteratureEntry

Modifier and Type	Method and Description
protected Property	DXParser.verifyDXProperty(Property property, Object value, ILiteratureEntry reference)

Uses of ILiteratureEntry in ambit2.core.io.json

Methods in ambit2.core.io.json that return ILiteratureEntry

Modifier and Type	Method and Description
ILiteratureEntry	SubstanceStudyParser.getReference()

Methods in ambit2.core.io.json with parameters of type ILiteratureEntry

Modifier and Type	Method and Description
void	SubstanceStudyParser.setReference(ILiteratureEntry reference)

Uses of ILiteratureEntry in ambit2.core.io.study

Methods in ambit2.core.io.study that return ILiteratureEntry

Modifier and Type	Method and Description
ILiteratureEntry	ProtocolEffectRecord2SubstanceProperty.getReference(ProtocolEffectRecord<String,IParams,String> detail)

Uses of ILiteratureEntry in ambit2.db.processors

Fields in ambit2.db.processors declared as ILiteratureEntry

Modifier and Type	Field and Description
protected ILiteratureEntry	BatchDBProcessor.reference

Methods in ambit2.db.processors that return ILiteratureEntry

Modifier and Type	Method and Description
ILiteratureEntry	BatchDBProcessor.getReference()

Methods in ambit2.db.processors with parameters of type ILiteratureEntry

Modifier and Type	Method and Description
void	BatchDBProcessor.setReference(ILiteratureEntry reference)

Uses of ILiteratureEntry in ambit2.db.update.reference

Methods in ambit2.db.update.reference that return ILiteratureEntry

Modifier and Type	Method and Description
ILiteratureEntry	ReadReference.getObject(ResultSet rs)

Methods in ambit2.db.update.reference with parameters of type ILiteratureEntry

Modifier and Type	Method and Description
double	ReadReference.calculateMetric(ILiteratureEntry object)

Constructors in ambit2.db.update.reference with parameters of type ILiteratureEntry

Constructor and Description
CreateReference(ILiteratureEntry ref)
DeleteReference(ILiteratureEntry ref)
UpdateReference(ILiteratureEntry ref)

Uses of ILiteratureEntry in ambit2.rest.rdf

Methods in ambit2.rest.rdf that return ILiteratureEntry

Modifier and Type	Method and Description
protected ILiteratureEntry	RDFReferenceIterator.createRecord()
protected ILiteratureEntry	RDFReferenceIterator.parseRecord(com.hp.hpl.jena.rdf.model.RDFNode newEntry, ILiteratureEntry record)

Methods in ambit2.rest.rdf with parameters of type ILiteratureEntry

Modifier and Type	Method and Description
protected void	RDFReferenceIterator.parseObjectURI(com.hp.hpl.jena.rdf.model.RDFNode uri, ILiteratureEntry record)
protected ILiteratureEntry	RDFReferenceIterator.parseRecord(com.hp.hpl.jena.rdf.model.RDFNode newEntry, ILiteratureEntry record)