Uses of Class
ambit2.base.exceptions.AmbitIOException

Packages that use AmbitIOException

Package	Description
ambit2.base.data	Base data structures; no chemistry.
ambit2.core.io	Input output support.
ambit2.core.processors.batch
ambit2.groupcontribution.dataset
ambit2.reactions.cli
ambit2.tautomers.tools

Uses of AmbitIOException in ambit2.base.data

Methods in ambit2.base.data that throw AmbitIOException

Modifier and Type	Method and Description
boolean	Template.load(InputStream in)
boolean	Template.load(Reader reader)
boolean	Property.save(OutputStream out)
boolean	Template.save(OutputStream out)
boolean	Property.save(Writer writer)
boolean	Template.save(Writer writer)

Uses of AmbitIOException in ambit2.core.io

Methods in ambit2.core.io that throw AmbitIOException

Modifier and Type	Method and Description
File	FileState.createFile()
static org.openscience.cdk.io.iterator.IIteratingChemObjectReader	FileInputState.getI5DReader(File file)
static org.openscience.cdk.io.iterator.IIteratingChemObjectReader	FileInputState.getI5DReader(InputStream in)
static org.openscience.cdk.io.iterator.IIteratingChemObjectReader	FileInputState.getI5ZReader(File file)
static IRawReader<IStructureRecord>	FileInputState.getRawReader(InputStream stream, String extension, org.openscience.cdk.io.formats.IChemFormat format)
org.openscience.cdk.io.iterator.IIteratingChemObjectReader	FileInputState.getReader()
org.openscience.cdk.io.iterator.IIteratingChemObjectReader	IInputState.getReader()
static org.openscience.cdk.io.iterator.IIteratingChemObjectReader	FileInputState.getReader(File file)
static org.openscience.cdk.io.iterator.IIteratingChemObjectReader	FileInputState.getReader(File file, org.openscience.cdk.io.formats.IChemFormat format)
static org.openscience.cdk.io.iterator.IIteratingChemObjectReader	FileInputState.getReader(InputStream stream, String ext)
static org.openscience.cdk.io.iterator.IIteratingChemObjectReader	FileInputState.getReader(InputStream stream, String extension, org.openscience.cdk.io.formats.IChemFormat format)
static File	ZipReader.getTempFolder()
org.openscience.cdk.io.IChemObjectWriter	FileOutputState.getWriter()
org.openscience.cdk.io.IChemObjectWriter	IOutputState.getWriter()
static org.openscience.cdk.io.IChemObjectWriter	FileOutputState.getWriter(OutputStream stream, String ext)
boolean	FileState.match()
File[]	ZipReader.unzip(File zipfile, File directory, OPTIONS options)
File[]	ZipReader.unzip(InputStream zipstream, File directory, OPTIONS options)

Constructors in ambit2.core.io that throw AmbitIOException

Constructor and Description
IteratingFileReader(File file)
IteratingFileReader(File file, org.openscience.cdk.io.formats.IChemFormat format)
ZipReader(File zipfile)
ZipReader(File zipfile, OPTIONS options)
ZipReader(InputStream zipstream)
ZipReader(InputStream zipstream, OPTIONS options)

Uses of AmbitIOException in ambit2.core.processors.batch

Methods in ambit2.core.processors.batch that throw AmbitIOException

Modifier and Type	Method and Description
org.openscience.cdk.io.iterator.IIteratingChemObjectReader	DefaultInputState.getReader()

Uses of AmbitIOException in ambit2.groupcontribution.dataset

Methods in ambit2.groupcontribution.dataset that throw AmbitIOException

Modifier and Type	Method and Description
static org.openscience.cdk.io.iterator.IIteratingChemObjectReader<org.openscience.cdk.interfaces.IAtomContainer>	DataSet.getReader(InputStream in, String extension)

Uses of AmbitIOException in ambit2.reactions.cli

Methods in ambit2.reactions.cli that throw AmbitIOException

Modifier and Type	Method and Description
protected org.openscience.cdk.io.iterator.IIteratingChemObjectReader<org.openscience.cdk.interfaces.IAtomContainer>	SyntheticAccessibilityCli.getReader(InputStream in, String extension)

Uses of AmbitIOException in ambit2.tautomers.tools

Methods in ambit2.tautomers.tools that throw AmbitIOException

Modifier and Type	Method and Description
protected org.openscience.cdk.io.iterator.IIteratingChemObjectReader<org.openscience.cdk.interfaces.IAtomContainer>	TautomerAnalysis.getReader(InputStream in, String extension)