ambit2.core.io

Class IteratingFolderReader<T,ItemReader extends org.openscience.cdk.io.iterator.IIteratingChemObjectReader>

java.lang.Object

org.openscience.cdk.io.ChemObjectIO

org.openscience.cdk.io.iterator.DefaultIteratingChemObjectReader

ambit2.core.io.IteratingFolderReader<T,ItemReader>

All Implemented Interfaces:

Closeable, AutoCloseable, Iterator, org.openscience.cdk.io.IChemObjectIO, org.openscience.cdk.io.IChemObjectReader, org.openscience.cdk.io.iterator.IIteratingChemObjectReader

Direct Known Subclasses:

IteratingMolFolderReader, RawIteratingFolderReader

public abstract class IteratingFolderReader<T,ItemReader extends org.openscience.cdk.io.iterator.IIteratingChemObjectReader>
extends org.openscience.cdk.io.iterator.DefaultIteratingChemObjectReader

Nested Class Summary

Nested classes/interfaces inherited from interface org.openscience.cdk.io.IChemObjectReader

org.openscience.cdk.io.IChemObjectReader.Mode

Field Summary

Fields

Modifier and Type	Field and Description
protected File[]	files
protected int	index
protected static Logger	logger
protected ItemReader	reader

Fields inherited from class org.openscience.cdk.io.iterator.DefaultIteratingChemObjectReader

errorHandler, mode

Constructor Summary

Constructors

Constructor and Description
IteratingFolderReader(File[] files)

Method Summary

Modifier and Type	Method and Description
void	close()
protected void	closeItemReader(ItemReader itemReader)
File[]	getFiles()
org.openscience.cdk.io.formats.IResourceFormat	getFormat()
protected abstract ItemReader	getItemReader(int index)
protected ItemReader	getNextReader()
boolean	hasNext()
Object	next()
void	setFiles(File[] files)
void	setReader(InputStream reader)
void	setReader(Reader reader)
String	toString()

Methods inherited from class org.openscience.cdk.io.iterator.DefaultIteratingChemObjectReader

accepts, handleError, handleError, handleError, handleError, remove, setErrorHandler, setReaderMode

Methods inherited from class org.openscience.cdk.io.ChemObjectIO

addChemObjectIOListener, addSetting, addSettings, fireIOSettingQuestion, getIOSettings, getListeners, getSetting, getSetting, getSettings, hasSetting, removeChemObjectIOListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.openscience.cdk.io.IChemObjectIO

addChemObjectIOListener, addSetting, addSettings, getIOSettings, getListeners, getSetting, getSetting, getSettings, hasSetting, removeChemObjectIOListener

Methods inherited from interface java.util.Iterator

forEachRemaining

Field Detail

logger

protected static Logger logger

files

protected File[] files

index

protected int index

reader

protected ItemReader extends org.openscience.cdk.io.iterator.IIteratingChemObjectReader reader

Constructor Detail

IteratingFolderReader

public IteratingFolderReader(File[] files)

Method Detail

getFormat

public org.openscience.cdk.io.formats.IResourceFormat getFormat()

close

public void close()
           throws IOException

Throws:

IOException

getItemReader

protected abstract ItemReader getItemReader(int index)
                                     throws Exception

Throws:

Exception

closeItemReader

protected void closeItemReader(ItemReader itemReader)
                        throws IOException

Throws:

IOException

next

public Object next()

hasNext

public boolean hasNext()

getNextReader

protected ItemReader getNextReader()
                            throws Exception

Throws:

Exception

getFiles

public File[] getFiles()

setFiles

public void setFiles(File[] files)

toString

public String toString()

Overrides:

toString in class Object

setReader

public void setReader(Reader reader)
               throws org.openscience.cdk.exception.CDKException

Throws:

org.openscience.cdk.exception.CDKException

setReader

public void setReader(InputStream reader)
               throws org.openscience.cdk.exception.CDKException

Throws:

org.openscience.cdk.exception.CDKException