ambit2.core.io

Class RawIteratingFolderReader

java.lang.Object

org.openscience.cdk.io.ChemObjectIO

org.openscience.cdk.io.iterator.DefaultIteratingChemObjectReader

ambit2.core.io.IteratingFolderReader<IStructureRecord,IRawReader<IStructureRecord>>

ambit2.core.io.RawIteratingFolderReader

All Implemented Interfaces:

IRawReader<IStructureRecord>, Closeable, AutoCloseable, Iterator, org.openscience.cdk.io.IChemObjectIO, org.openscience.cdk.io.IChemObjectReader, org.openscience.cdk.io.iterator.IIteratingChemObjectReader

Direct Known Subclasses:

ZipReader

public class RawIteratingFolderReader
extends IteratingFolderReader<IStructureRecord,IRawReader<IStructureRecord>>
implements IRawReader<IStructureRecord>

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
protected static class	RawIteratingFolderReader.FileNameMode

Nested classes/interfaces inherited from interface org.openscience.cdk.io.IChemObjectReader

org.openscience.cdk.io.IChemObjectReader.Mode

Field Summary

Fields

Modifier and Type	Field and Description
protected Property	casProperty
protected CASProcessor	casTransformer
protected Property	einecsProperty
protected RawIteratingFolderReader.FileNameMode	mode
protected Property	nameProperty

Fields inherited from class ambit2.core.io.IteratingFolderReader

files, index, logger, reader

Fields inherited from class org.openscience.cdk.io.iterator.DefaultIteratingChemObjectReader

errorHandler

Constructor Summary

Constructors

Constructor and Description
RawIteratingFolderReader(File[] files)

Method Summary

Modifier and Type	Method and Description
protected void	assignCASRN(IStructureRecord record)
protected void	assignEINECS(IStructureRecord record)
protected void	assignName(IStructureRecord record)
protected IRawReader<IStructureRecord>	getItemReader(int index)
RawIteratingFolderReader.FileNameMode	getMode()
Object	next()
IStructureRecord	nextRecord()
void	setFiles(File[] files)
void	setMode(RawIteratingFolderReader.FileNameMode mode)

Methods inherited from class ambit2.core.io.IteratingFolderReader

close, closeItemReader, getFiles, getFormat, getNextReader, hasNext, setReader, setReader, toString

Methods inherited from class org.openscience.cdk.io.iterator.DefaultIteratingChemObjectReader

accepts, handleError, handleError, handleError, handleError, remove, setErrorHandler, setReaderMode

Methods inherited from class org.openscience.cdk.io.ChemObjectIO

addChemObjectIOListener, addSetting, addSettings, fireIOSettingQuestion, getIOSettings, getListeners, getSetting, getSetting, getSettings, hasSetting, removeChemObjectIOListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.openscience.cdk.io.IChemObjectReader

handleError, handleError, handleError, handleError, setErrorHandler, setReader, setReader, setReaderMode

Methods inherited from interface org.openscience.cdk.io.IChemObjectIO

accepts, addChemObjectIOListener, addSetting, addSettings, close, getFormat, getIOSettings, getListeners, getSetting, getSetting, getSettings, hasSetting, removeChemObjectIOListener

Methods inherited from interface java.util.Iterator

forEachRemaining, hasNext, remove

Field Detail

mode

protected RawIteratingFolderReader.FileNameMode mode

casTransformer

protected CASProcessor casTransformer

einecsProperty

protected Property einecsProperty

casProperty

protected Property casProperty

nameProperty

protected Property nameProperty

Constructor Detail

RawIteratingFolderReader

public RawIteratingFolderReader(File[] files)

Method Detail

getMode

public RawIteratingFolderReader.FileNameMode getMode()

setMode

public void setMode(RawIteratingFolderReader.FileNameMode mode)

setFiles

public void setFiles(File[] files)

Overrides:

setFiles in class IteratingFolderReader<IStructureRecord,IRawReader<IStructureRecord>>

next

public Object next()

Specified by:

next in interface Iterator

Overrides:

next in class IteratingFolderReader<IStructureRecord,IRawReader<IStructureRecord>>

nextRecord

public IStructureRecord nextRecord()

Specified by:

nextRecord in interface IRawReader<IStructureRecord>

assignCASRN

protected void assignCASRN(IStructureRecord record)

assignEINECS

protected void assignEINECS(IStructureRecord record)

assignName

protected void assignName(IStructureRecord record)

getItemReader

protected IRawReader<IStructureRecord> getItemReader(int index)
                                              throws Exception

Specified by:

getItemReader in class IteratingFolderReader<IStructureRecord,IRawReader<IStructureRecord>>

Throws:

Exception