ambit2.descriptors.processors

Class AtomEnvironmentList

java.lang.Object

java.util.AbstractCollection<E>

java.util.AbstractList<E>

java.util.ArrayList<AtomEnvironment>

ambit2.descriptors.processors.AtomEnvironmentList

All Implemented Interfaces:

IAmbitResult, Serializable, Cloneable, Iterable<AtomEnvironment>, Collection<AtomEnvironment>, List<AtomEnvironment>, RandomAccess

public class AtomEnvironmentList
extends ArrayList<AtomEnvironment>
implements IAmbitResult

A list of ambit2.descriptors.data.descriptors.AtomEnvironment.

Author:

Nina Jeliazkova nina@acad.bg Modified Aug 31, 2006

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
protected static Logger	logger
protected boolean	noDuplicates
protected String	title

Fields inherited from class java.util.AbstractList

modCount

Constructor Summary

Constructors

Constructor and Description
AtomEnvironmentList()
AtomEnvironmentList(Collection arg0)
AtomEnvironmentList(int arg0)

Method Summary

Modifier and Type	Method and Description
boolean	add(AtomEnvironment o)
boolean	addAll(Collection<? extends AtomEnvironment> c)
int	frequency()
String	getTitle()
float	hellinger(AtomEnvironmentList hist) Hellinger distance between two discrete probability distributions pi and qi.
boolean	isNoDuplicates()
void	setNoDuplicates(boolean noDuplicates)
void	setTitle(String title)
String	toString()
void	update(Object object)
void	write(Writer writer) Writes the object

Methods inherited from class java.util.ArrayList

add, addAll, clear, clone, contains, ensureCapacity, forEach, get, indexOf, isEmpty, iterator, lastIndexOf, listIterator, listIterator, remove, remove, removeAll, removeIf, removeRange, replaceAll, retainAll, set, size, sort, spliterator, subList, toArray, toArray, trimToSize

Methods inherited from class java.util.AbstractList

equals, hashCode

Methods inherited from class java.util.AbstractCollection

containsAll

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface ambit2.base.processors.IAmbitResult

clear

Methods inherited from interface java.util.List

containsAll, equals, hashCode

Methods inherited from interface java.util.Collection

parallelStream, stream

Field Detail

logger

protected static Logger logger

title

protected String title

noDuplicates

protected boolean noDuplicates

Constructor Detail

AtomEnvironmentList

public AtomEnvironmentList()

AtomEnvironmentList

public AtomEnvironmentList(int arg0)

AtomEnvironmentList

public AtomEnvironmentList(Collection arg0)

Method Detail

update

public void update(Object object)
            throws net.idea.modbcum.i.exceptions.AmbitException

Specified by:

update in interface IAmbitResult

Throws:

net.idea.modbcum.i.exceptions.AmbitException

write

public void write(Writer writer)
           throws net.idea.modbcum.i.exceptions.AmbitException

Description copied from interface: IAmbitResult

Writes the object

Specified by:

write in interface IAmbitResult

Throws:

net.idea.modbcum.i.exceptions.AmbitException

add

public boolean add(AtomEnvironment o)

Specified by:

add in interface Collection<AtomEnvironment>

Specified by:

add in interface List<AtomEnvironment>

Overrides:

add in class ArrayList<AtomEnvironment>

addAll

public boolean addAll(Collection<? extends AtomEnvironment> c)

Specified by:

addAll in interface Collection<AtomEnvironment>

Specified by:

addAll in interface List<AtomEnvironment>

Overrides:

addAll in class ArrayList<AtomEnvironment>

toString

public String toString()

Overrides:

toString in class AbstractCollection<AtomEnvironment>

getTitle

public String getTitle()

Specified by:

getTitle in interface IAmbitResult

setTitle

public void setTitle(String title)

Specified by:

setTitle in interface IAmbitResult

frequency

public int frequency()

hellinger

public float hellinger(AtomEnvironmentList hist)
                throws Exception

Hellinger distance between two discrete probability distributions pi and qi. Range is (0,2), where 2 means equal distributions. * @param hist

Returns:

sum(( sqrt(Pi) + sqrt(Qi) )^2)

Throws:

Exception

isNoDuplicates

public boolean isNoDuplicates()

setNoDuplicates

public void setNoDuplicates(boolean noDuplicates)