Uses of Class
ambit2.descriptors.processors.AtomEnvironmentList

Packages that use AtomEnvironmentList

Package	Description
ambit2.descriptors.processors
ambit2.similarity.knn
ambit2.similarity.measure

Uses of AtomEnvironmentList in ambit2.descriptors.processors

Methods in ambit2.descriptors.processors that return AtomEnvironmentList

Modifier and Type	Method and Description
AtomEnvironmentList	AtomEnvironmentGenerator.generateProperty(org.openscience.cdk.interfaces.IAtomContainer atomContainer)

Methods in ambit2.descriptors.processors with parameters of type AtomEnvironmentList

Modifier and Type	Method and Description
float	AtomEnvironmentList.hellinger(AtomEnvironmentList hist) Hellinger distance between two discrete probability distributions pi and qi.

Uses of AtomEnvironmentList in ambit2.similarity.knn

Methods in ambit2.similarity.knn that return AtomEnvironmentList

Modifier and Type	Method and Description
protected AtomEnvironmentList	NNAtomEnvironmentSimilarity.getSelectedAttributes(AtomEnvironmentList attributes)

Methods in ambit2.similarity.knn with parameters of type AtomEnvironmentList

Modifier and Type	Method and Description
protected AtomEnvironmentList	NNAtomEnvironmentSimilarity.getSelectedAttributes(AtomEnvironmentList attributes)

Constructor parameters in ambit2.similarity.knn with type arguments of type AtomEnvironmentList

Constructor and Description
NNAtomEnvironmentSimilarity(IDistanceFunction<AtomEnvironmentList> distanceFunction, int knn)

Uses of AtomEnvironmentList in ambit2.similarity.measure

Methods in ambit2.similarity.measure with parameters of type AtomEnvironmentList

Modifier and Type	Method and Description
float	AtomEnvironmentsDistance.getDistance(AtomEnvironmentList object1, AtomEnvironmentList object2) Calls hellinger(AtomEnvironmentList) and divides on 2 to get it in (0,1) range.
float	AtomEnvironmentsDistance.getNativeComparison(AtomEnvironmentList object1, AtomEnvironmentList object2)