ambit2.export.isa.v1_0

Class ISAJsonExporter1_0

java.lang.Object

ambit2.export.isa.v1_0.ISAJsonExporter1_0

All Implemented Interfaces:

IISAExport, Serializable, net.idea.modbcum.i.processors.IProcessor<SubstanceRecord,Investigation>, net.idea.modbcum.i.reporter.Reporter<SubstanceRecord,Investigation>

public class ISAJsonExporter1_0
extends Object
implements IISAExport, net.idea.modbcum.i.reporter.Reporter<SubstanceRecord,Investigation>

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
protected boolean	enabled
protected static Logger	logger

Constructor Summary

Constructors

Constructor and Description
ISAJsonExporter1_0()
ISAJsonExporter1_0(File outputDir, File exportConfig)
ISAJsonExporter1_0(File outputDir, ISAJsonExportConfig cfg)
ISAJsonExporter1_0(File outputDir, ISAJsonExportConfig cfg, File extDataFile)

Method Summary

Modifier and Type	Method and Description
void	close()
void	export(SubstanceEndpointsBundle endpointBundle, Iterator<SubstanceRecord> records)
File	getExportJsonConfig()
File	getExternalDataFile()
String	getFileExtension()
long	getID()
ISAConst.ISAFormat	getISAFormat()
ISAConst.ISAVersion	getISAVersion()
String	getLicenseURI()
Investigation	getOutput()
File	getOutputDir()
String	getResultAsJson()
long	getTimeout()
File	getXmlISAConfig()
void	init(SubstanceEndpointsBundle endpointBundle)
boolean	isEnabled()
void	open()
Investigation	process(SubstanceRecord record)
void	setEnabled(boolean arg0)
void	setExportJsonConfig(File exportConfig)
void	setExternalDataFile(File externalDataFile)
void	setLicenseURI(String arg0)
void	setOutput(Investigation output)
void	setOutputDir(File outputDir)
void	setTimeout(long arg0)
void	setXmlISAConfig(File xmlISAConfig)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

enabled

protected boolean enabled

logger

protected static final Logger logger

Constructor Detail

ISAJsonExporter1_0

public ISAJsonExporter1_0()

ISAJsonExporter1_0

public ISAJsonExporter1_0(File outputDir,
                          File exportConfig)

ISAJsonExporter1_0

public ISAJsonExporter1_0(File outputDir,
                          ISAJsonExportConfig cfg)

ISAJsonExporter1_0

public ISAJsonExporter1_0(File outputDir,
                          ISAJsonExportConfig cfg,
                          File extDataFile)

Method Detail

getExportJsonConfig

public File getExportJsonConfig()

setExportJsonConfig

public void setExportJsonConfig(File exportConfig)

getXmlISAConfig

public File getXmlISAConfig()

setXmlISAConfig

public void setXmlISAConfig(File xmlISAConfig)

getOutputDir

public File getOutputDir()

setExternalDataFile

public void setExternalDataFile(File externalDataFile)

getExternalDataFile

public File getExternalDataFile()

setOutputDir

public void setOutputDir(File outputDir)

getISAFormat

public ISAConst.ISAFormat getISAFormat()

Specified by:

getISAFormat in interface IISAExport

getISAVersion

public ISAConst.ISAVersion getISAVersion()

Specified by:

getISAVersion in interface IISAExport

init

public void init(SubstanceEndpointsBundle endpointBundle)
          throws Exception

Throws:

Exception

export

public void export(SubstanceEndpointsBundle endpointBundle,
                   Iterator<SubstanceRecord> records)
            throws Exception

Throws:

Exception

getResultAsJson

public String getResultAsJson()
                       throws Exception

Throws:

Exception

getID

public long getID()

Specified by:

getID in interface net.idea.modbcum.i.processors.IProcessor<SubstanceRecord,Investigation>

isEnabled

public boolean isEnabled()

Specified by:

isEnabled in interface net.idea.modbcum.i.processors.IProcessor<SubstanceRecord,Investigation>

open

public void open()
          throws Exception

Specified by:

open in interface net.idea.modbcum.i.processors.IProcessor<SubstanceRecord,Investigation>

Throws:

Exception

process

public Investigation process(SubstanceRecord record)
                      throws Exception

Specified by:

process in interface net.idea.modbcum.i.processors.IProcessor<SubstanceRecord,Investigation>

Throws:

Exception

setEnabled

public void setEnabled(boolean arg0)

Specified by:

setEnabled in interface net.idea.modbcum.i.processors.IProcessor<SubstanceRecord,Investigation>

close

public void close()
           throws Exception

Specified by:

close in interface net.idea.modbcum.i.processors.IProcessor<SubstanceRecord,Investigation>

Specified by:

close in interface net.idea.modbcum.i.reporter.Reporter<SubstanceRecord,Investigation>

Throws:

Exception

getFileExtension

public String getFileExtension()

Specified by:

getFileExtension in interface net.idea.modbcum.i.reporter.Reporter<SubstanceRecord,Investigation>

getLicenseURI

public String getLicenseURI()

Specified by:

getLicenseURI in interface net.idea.modbcum.i.reporter.Reporter<SubstanceRecord,Investigation>

getOutput

public Investigation getOutput()
                        throws Exception

Specified by:

getOutput in interface net.idea.modbcum.i.reporter.Reporter<SubstanceRecord,Investigation>

Throws:

Exception

getTimeout

public long getTimeout()

Specified by:

getTimeout in interface net.idea.modbcum.i.reporter.Reporter<SubstanceRecord,Investigation>

setLicenseURI

public void setLicenseURI(String arg0)

Specified by:

setLicenseURI in interface net.idea.modbcum.i.reporter.Reporter<SubstanceRecord,Investigation>

setOutput

public void setOutput(Investigation output)
               throws Exception

Specified by:

setOutput in interface net.idea.modbcum.i.reporter.Reporter<SubstanceRecord,Investigation>

Throws:

Exception

setTimeout

public void setTimeout(long arg0)

Specified by:

setTimeout in interface net.idea.modbcum.i.reporter.Reporter<SubstanceRecord,Investigation>