ambit2.export.isa.v1_0

Class ISAJsonMapper1_0

java.lang.Object

ambit2.export.isa.v1_0.ISAJsonMapper1_0

All Implemented Interfaces:

IISADataMapper

public class ISAJsonMapper1_0
extends Object
implements IISADataMapper

Field Summary

Fields

Modifier and Type	Field and Description
protected Investigation	investigation
protected static Logger	logger

Constructor Summary

Constructors

Constructor and Description
ISAJsonMapper1_0()

Method Summary

Modifier and Type	Method and Description
protected int	checkAssay(Study study, int assayIndex)
protected int	checkAssayProcess(Assay assay, int processIndex)
protected int	checkStudy(int studyIndex)
protected int	checkStudyProcess(Study study, int processIndex)
void	putDataInObject(String data, ISALocation location, Object obj, boolean isAdditiveContent) Data is put into the Object using element and subElement information
void	putDouble(Double d, ISALocation location)
void	putInteger(Integer k, ISALocation location)
void	putObject(Object o, ISALocation location)
void	putString(String s, ISALocation location)
void	putString(String s, ISALocation location, boolean isAdditiveContent)
void	setTargetDataObject(Object target)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

logger

protected static final Logger logger

investigation

protected Investigation investigation

Constructor Detail

ISAJsonMapper1_0

public ISAJsonMapper1_0()

Method Detail

putObject

public void putObject(Object o,
                      ISALocation location)
               throws Exception

Specified by:

putObject in interface IISADataMapper

Throws:

Exception

setTargetDataObject

public void setTargetDataObject(Object target)
                         throws Exception

Specified by:

setTargetDataObject in interface IISADataMapper

Throws:

Exception

putInteger

public void putInteger(Integer k,
                       ISALocation location)
                throws Exception

Specified by:

putInteger in interface IISADataMapper

Throws:

Exception

putDouble

public void putDouble(Double d,
                      ISALocation location)
               throws Exception

Specified by:

putDouble in interface IISADataMapper

Throws:

Exception

putString

public void putString(String s,
                      ISALocation location)
               throws Exception

Specified by:

putString in interface IISADataMapper

Throws:

Exception

putString

public void putString(String s,
                      ISALocation location,
                      boolean isAdditiveContent)
               throws Exception

Specified by:

putString in interface IISADataMapper

Throws:

Exception

putDataInObject

public void putDataInObject(String data,
                            ISALocation location,
                            Object obj,
                            boolean isAdditiveContent)
                     throws Exception

Data is put into the Object using element and subElement information

Throws:

Exception

checkStudy

protected int checkStudy(int studyIndex)

checkStudyProcess

protected int checkStudyProcess(Study study,
                                int processIndex)

checkAssay

protected int checkAssay(Study study,
                         int assayIndex)

checkAssayProcess

protected int checkAssayProcess(Assay assay,
                                int processIndex)