Uses of Interface
ambit2.similarity.measure.IDistanceFunction

Packages that use IDistanceFunction

Package	Description
ambit2.descriptors.simmatrix
ambit2.similarity.knn
ambit2.similarity.measure
ambit2.similarity.stats

Uses of IDistanceFunction in ambit2.descriptors.simmatrix

Fields in ambit2.descriptors.simmatrix declared as IDistanceFunction

Modifier and Type	Field and Description
protected IDistanceFunction<T>	SimilarityMatrix.distance

Methods in ambit2.descriptors.simmatrix that return IDistanceFunction

Modifier and Type	Method and Description
IDistanceFunction<T>	SimilarityMatrix.getDistance()

Methods in ambit2.descriptors.simmatrix with parameters of type IDistanceFunction

Modifier and Type	Method and Description
void	SimilarityMatrix.setDistance(IDistanceFunction<T> distance)

Uses of IDistanceFunction in ambit2.similarity.knn

Fields in ambit2.similarity.knn declared as IDistanceFunction

Modifier and Type	Field and Description
protected IDistanceFunction<T>	NearestNeighborsSearch.distanceFunction

Methods in ambit2.similarity.knn that return IDistanceFunction

Modifier and Type	Method and Description
IDistanceFunction<T>	INearestNeighborsSearch.getDistanceFunction()
IDistanceFunction<T>	NearestNeighborsSearch.getDistanceFunction()

Methods in ambit2.similarity.knn with parameters of type IDistanceFunction

Modifier and Type	Method and Description
void	INearestNeighborsSearch.setDistanceFunction(IDistanceFunction<T> distanceFunction)
void	NearestNeighborsSearch.setDistanceFunction(IDistanceFunction<T> distanceFunction)

Constructors in ambit2.similarity.knn with parameters of type IDistanceFunction

Constructor and Description
NearestNeighborsSearch(IDistanceFunction<T> distanceFunction)
NearestNeighborsSimilarity(IDistanceFunction<Features> distanceFunction, int knn)
NNAtomEnvironmentSimilarity(IDistanceFunction<AtomEnvironmentList> distanceFunction, int knn)
NNFingerprintSimilarity(IDistanceFunction<BitSet> distanceFunction, int knn)

Uses of IDistanceFunction in ambit2.similarity.measure

Classes in ambit2.similarity.measure that implement IDistanceFunction

Modifier and Type	Class and Description
class	AtomEnvironmentsDistance
class	BinaryKernelDistance Binary Kernel Discrimination method applied to fingerprints (bitset).
class	EuclideanDistance
class	FingerprintDistance Tanimoto similarity index between fingerprints.
class	HammingDistance The Hamming distance between two strings of equal length is the number of positions for which the corresponding symbols are different/
class	LevensteinDistance Levenstein (edit) distance between strings.
class	MCSSDistance The MCSS of two compounds is the largest possible substructure that is present in both structures.

Uses of IDistanceFunction in ambit2.similarity.stats

Methods in ambit2.similarity.stats that return IDistanceFunction

Modifier and Type	Method and Description
IDistanceFunction<T>	INearestNeighborsSearch.getDistanceFunction()

Methods in ambit2.similarity.stats with parameters of type IDistanceFunction

Modifier and Type	Method and Description
void	INearestNeighborsSearch.setDistanceFunction(IDistanceFunction<T> distanceFunction)