Uses of Class
ambit2.sln.SLNContainer

Packages that use SLNContainer

Package	Description
ambit2.sln
ambit2.sln.cli
ambit2.sln.dictionary
ambit2.sln.io
ambit2.sln.search

Uses of SLNContainer in ambit2.sln

Fields in ambit2.sln with type parameters of type SLNContainer

Modifier and Type	Field and Description
List<SLNContainer>	SLNCompositeObject.containers

Methods in ambit2.sln that return SLNContainer

Modifier and Type	Method and Description
SLNContainer	SLNParser.parse(String sln)

Methods in ambit2.sln with parameters of type SLNContainer

Modifier and Type	Method and Description
static void	SLNHelper.clearAtomIDs(SLNContainer container)
static String	SLNHelper.getAtomsAttributes(SLNContainer container)
static String	SLNHelper.getBondsAttributes(SLNContainer container)
static String	SLNHelper.getCTString(SLNContainer container)
static String	SLNHelper.getMolAttributes(SLNContainer container)
String	SLNHelper.toSLN(SLNContainer container)

Uses of SLNContainer in ambit2.sln.cli

Fields in ambit2.sln.cli declared as SLNContainer

Modifier and Type	Field and Description
SLNContainer	SLNCli.slnContainer

Methods in ambit2.sln.cli with parameters of type SLNContainer

Modifier and Type	Method and Description
int	SLNCli.convert(SLNContainer container0)
int	SLNCli.expandSLNContainer(SLNContainer container)
int	SLNCli.generateCombLibrary(SLNContainer container)
void	SLNCli.printExtendedCT(SLNContainer container)
boolean	SLNCli.ssMatch(SLNContainer query, org.openscience.cdk.interfaces.IAtomContainer mol)

Uses of SLNContainer in ambit2.sln.dictionary

Methods in ambit2.sln.dictionary that return SLNContainer

Modifier and Type	Method and Description
SLNContainer	Expander.generateExpandedSLNContainer(SLNContainer container)
SLNContainer	Expander.getExpandedSLNContainer()
SLNContainer	GenericDictionaryObject.getSLNContainer()
SLNContainer	ISLNDictionaryObject.getSLNContainer()

Methods in ambit2.sln.dictionary that return types with arguments of type SLNContainer

Modifier and Type	Method and Description
List<SLNContainer>	Expander.generateMarkushCombinatorialList(SLNContainer container)

Methods in ambit2.sln.dictionary with parameters of type SLNContainer

Modifier and Type	Method and Description
static SLNDictionary.DictionaryObjectReferencesCheckResult	SLNDictionary.checkContainer(SLNContainer container)
SLNContainer	Expander.generateExpandedSLNContainer(SLNContainer container)
List<SLNContainer>	Expander.generateMarkushCombinatorialList(SLNContainer container)

Constructors in ambit2.sln.dictionary with parameters of type SLNContainer

Constructor and Description
AtomDictionaryObject(String name, String sln, SLNContainer container)
MacroAtomDictionaryObject(String name, String sln, SLNContainer container)

Uses of SLNContainer in ambit2.sln.io

Methods in ambit2.sln.io that return SLNContainer

Modifier and Type	Method and Description
SLNContainer	SLN2ChemObject.atomContainerToSLNContainer(org.openscience.cdk.interfaces.IAtomContainer container)
SLNContainer	SLN2Substance.compositionRelationToSLNContainer(ambit2.base.relation.composition.CompositionRelation compRel)
SLNContainer	SLN2ChemObject.QueryAtomContainerToSLNContainer(org.openscience.cdk.isomorphism.matchers.IQueryAtomContainer query)
SLNContainer	SLN2ChemObject.SMIRKSReactionToSLNContainer(ambit2.smarts.SMIRKSReaction reaction)
SLNContainer	SLN2Substance.structureRecordToSLNContainer(ambit2.base.interfaces.IStructureRecord structure)

Methods in ambit2.sln.io with parameters of type SLNContainer

Modifier and Type	Method and Description
LinearNotationType	SLN2ChemObject.getCompatibleNotation(SLNContainer slnContainer)
org.openscience.cdk.interfaces.IAtomContainer	SLN2ChemObject.slnContainerToAtomContainer(SLNContainer slnContainer)
ambit2.base.relation.composition.CompositionRelation	SLN2Substance.slnContainerToCompositionRelation(SLNContainer slnContainer)
org.openscience.cdk.isomorphism.matchers.IQueryAtomContainer	SLN2ChemObject.slnContainerToQueryAtomContainer(SLNContainer slnContainer)
ambit2.smarts.SMIRKSReaction	SLN2ChemObject.slnContainerToSMIRKSReaction(SLNContainer container)
ambit2.base.interfaces.IStructureRecord	SLN2Substance.slnContainerToStructureRecord(SLNContainer slnContainer)

Uses of SLNContainer in ambit2.sln.search

Methods in ambit2.sln.search that return SLNContainer

Modifier and Type	Method and Description
SLNContainer	SLNSearchManager.getQuerySLNContainer()

Methods in ambit2.sln.search with parameters of type SLNContainer

Modifier and Type	Method and Description
void	SLNSearchManager.setQuerySLNContainer(SLNContainer query)