Uses of Class
ambit2.smarts.query.SMARTSException

Packages that use SMARTSException

Package	Description
ambit2.descriptors
ambit2.smarts.query	Ambit implementation of SMARTS parser

Uses of SMARTSException in ambit2.descriptors

Methods in ambit2.descriptors that throw SMARTSException

Modifier and Type	Method and Description
boolean	PKANode.find(org.openscience.cdk.interfaces.IAtomContainer ac)
void	FunctionalGroup.setQuery(ISmartsPattern<org.openscience.cdk.interfaces.IAtomContainer> query)
protected PKANode	PKASmartsDescriptor.traverse(org.openscience.cdk.interfaces.IAtomContainer ac, PKANode node, ArrayList<String> trace)

Uses of SMARTSException in ambit2.smarts.query

Methods in ambit2.smarts.query that throw SMARTSException

Modifier and Type	Method and Description
static ISmartsPattern	SmartsPatternFactory.createSmartsPattern(SmartsPatternFactory.SmartsParser parser, String smarts, boolean negate)
ISmartsPattern	ISmartsPatternFactory.createSmartsPattern(String smarts, boolean negate)
ISmartsPattern	SmartsPatternFactory.createSmartsPattern(String smarts, boolean negate)
org.openscience.cdk.interfaces.IAtomContainer	FastSmartsMatcher.getMatchingStructure(org.openscience.cdk.interfaces.IAtomContainer mol)
org.openscience.cdk.interfaces.IAtomContainer	ISmartsPattern.getMatchingStructure(org.openscience.cdk.interfaces.IAtomContainer mol)
org.openscience.cdk.interfaces.IAtomContainer	SmartsPatternAmbit.getMatchingStructure(org.openscience.cdk.interfaces.IAtomContainer mol)
org.openscience.cdk.interfaces.IAtomContainer	SmartsPatternCDK.getMatchingStructure(org.openscience.cdk.interfaces.IAtomContainer mol)
List	AbstractSmartsPattern.getUniqueMatchingAtoms()
List	ISmartsPattern.getUniqueMatchingAtoms() Just for backward compatibility
List<List<Integer>>	SmartsPatternCDK.getUniqueMatchingAtoms() For backward compatibility
List<List<Integer>>	SmartsPatternCDK.getUniqueMatchingAtoms(org.openscience.cdk.interfaces.IAtomContainer mol)
int	FastSmartsMatcher.hasSMARTSPattern(org.openscience.cdk.interfaces.IAtomContainer mol)
int	SmartsPatternAmbit.hasSMARTSPattern(org.openscience.cdk.interfaces.IAtomContainer mol)
int	SmartsPatternCDK.hasSMARTSPattern(org.openscience.cdk.interfaces.IAtomContainer mol)
int	ISmartsPattern.hasSMARTSPattern(T object)
int	AbstractSmartsPattern.match(org.openscience.cdk.interfaces.IAtomContainer mol)
int	ISmartsPattern.match(org.openscience.cdk.interfaces.IAtomContainer mol)
void	AbstractSmartsPattern.setSmarts(String smarts)
void	FastSmartsMatcher.setSmarts(String smarts)
void	ISmartsPattern.setSmarts(String smarts)
void	SmartsPatternAmbit.setSmarts(String smarts)
void	SmartsPatternCDK.setSmarts(String smarts)

Constructors in ambit2.smarts.query that throw SMARTSException

Constructor and Description
FastSmartsMatcher(String smarts, boolean negate)
SmartsPatternAmbit()
SmartsPatternAmbit(org.openscience.cdk.interfaces.IChemObjectBuilder builder)
SmartsPatternAmbit(String smarts)
SmartsPatternAmbit(String smarts, boolean negate, org.openscience.cdk.interfaces.IChemObjectBuilder builder)
SmartsPatternAmbit(String smarts, org.openscience.cdk.interfaces.IChemObjectBuilder builder)
SmartsPatternCDK(String smarts)
SmartsPatternCDK(String smarts, boolean negate)