Uses of Package
ambit2.smarts

Packages that use ambit2.smarts

Package	Description
ambit2.db.search.structure
ambit2.db.update.fp
ambit2.dbui
ambit2.groupcontribution
ambit2.groupcontribution.correctionfactors
ambit2.groupcontribution.io
ambit2.reactions
ambit2.reactions.fragmentation
ambit2.reactions.reactor
ambit2.reactions.retrosynth
ambit2.reactions.rules
ambit2.reactions.rules.conditions
ambit2.sln.io
ambit2.smarts	SMARTS parser
ambit2.smarts.groups
ambit2.smarts.processors
ambit2.smarts.query	Ambit implementation of SMARTS parser
ambit2.smarts.smirks
ambit2.tautomers.rules

Classes in ambit2.smarts used by ambit2.db.search.structure

Class and Description
SmartsToChemObject

Classes in ambit2.smarts used by ambit2.db.update.fp

Class and Description
SmartsScreeningKeys

Classes in ambit2.smarts used by ambit2.dbui

Class and Description
SmartsToChemObject

Classes in ambit2.smarts used by ambit2.groupcontribution

Class and Description
IsomorphismTester
SmartsParser Implements SMARTS parser

Classes in ambit2.smarts used by ambit2.groupcontribution.correctionfactors

Class and Description
IsomorphismTester
SmartsConst.SSM_MODE
SmartsParser Implements SMARTS parser

Classes in ambit2.smarts used by ambit2.groupcontribution.io

Class and Description
IsomorphismTester
SmartsParser Implements SMARTS parser

Classes in ambit2.smarts used by ambit2.reactions

Class and Description
SmartsConst.SSM_MODE
SMIRKSManager
SMIRKSReaction

Classes in ambit2.smarts used by ambit2.reactions.fragmentation

Class and Description
IsomorphismTester

Classes in ambit2.smarts used by ambit2.reactions.reactor

Class and Description
SMIRKSManager

Classes in ambit2.smarts used by ambit2.reactions.retrosynth

Class and Description
SMIRKSManager

Classes in ambit2.smarts used by ambit2.reactions.rules

Class and Description
SMIRKSReaction

Classes in ambit2.smarts used by ambit2.reactions.rules.conditions

Class and Description
IsomorphismTester
SmartsParser Implements SMARTS parser

Classes in ambit2.smarts used by ambit2.sln.io

Class and Description
SMIRKSReaction

Classes in ambit2.smarts used by ambit2.smarts

Class and Description
DoubleBondStereoInfo
DoubleBondStereoInfo.DBStereo
EquivalenceTester
ExtendedChiralityInfo
IAcceptable
IsomorphismTester
Node
QuerySequenceElement
ScreeningData
SequenceElement
SmartsAtomExpression
SmartsBondExpression
SmartsConst.HandleHAtoms
SmartsConst.SSM_MODE
SmartsExpressionToken
SmartsFlags
SmartsParser Implements SMARTS parser
SmartsParserError
SmartsToChemObject
SMIRKSManager
SMIRKSReaction
StereoChange
StereoChange.StereoElementType
StructInfo
StructureSetAnalyzer.CharStructInfo

Classes in ambit2.smarts used by ambit2.smarts.groups

Class and Description
IsomorphismTester
QuerySequenceElement
SmartsAtomExpression
SmartsConst.SSM_MODE
SmartsParser Implements SMARTS parser

Classes in ambit2.smarts used by ambit2.smarts.processors

Class and Description
CMLUtilities SMARTSProp is a per atom property & hvnNrrrrrrrrRRRRRRRR extractSMARTSProperties(IAtomContainer mol) setCMLSMARTSProperties(IAtomContainer mol) mol.getAtom(i).setProperty("SMARTSProp", prop); if already set,
IsomorphismTester
QuerySequenceElement
SmartsConst.SSM_MODE
SMIRKSManager
SMIRKSReaction

Classes in ambit2.smarts used by ambit2.smarts.query

Class and Description
IsomorphismTester
SmartsManager Implements utilities needed for handling searching with SMARTS utilizing JDK library.
SmartsParser Implements SMARTS parser

Classes in ambit2.smarts used by ambit2.smarts.smirks

Class and Description
Node
QuerySequenceElement
SmartsAtomExpression
SmartsConst.HandleHAtoms
SMIRKSReaction
StereoChange

Classes in ambit2.smarts used by ambit2.tautomers.rules

Class and Description
IsomorphismTester
SmartsFlags
SmartsParser Implements SMARTS parser