Uses of Class
ambit2.base.data.Profile

Packages that use Profile

Package	Description
ambit2.base.data	Base data structures; no chemistry.
ambit2.core.io	Input output support.
ambit2.db.processors
ambit2.db.readers
ambit2.db.reporters
ambit2.db.reporters.xlsx
ambit2.db.results
ambit2.db.search.property
ambit2.db.search.structure
ambit2.dbui
ambit2.dbui.dictionary
ambit2.descriptors.processors
ambit2.rest.dataset
ambit2.ui
ambit2.ui.editors
ambit2.ui.table

Uses of Profile in ambit2.base.data

Subclasses of Profile in ambit2.base.data

Modifier and Type	Class and Description
class	Endpoints
class	PredictedVarsTemplate
class	Template Templates are just a (meaningful) set of properties

Methods in ambit2.base.data with parameters of type Profile

Modifier and Type	Method and Description
void	Profile.add(Profile<P> profile, boolean enabled)

Constructors in ambit2.base.data with parameters of type Profile

Constructor and Description
ProfileListModel(Profile<Property> profile)
ProfileListModel(Profile<Property> profile, Boolean visibility)

Constructor parameters in ambit2.base.data with type arguments of type Profile

Constructor and Description
ProfileListModel(Hashtable<String,Profile<Property>> profiles, Boolean visibility)

Uses of Profile in ambit2.core.io

Fields in ambit2.core.io declared as Profile

Modifier and Type	Field and Description
protected Profile	SimpleIOListener.properties

Methods in ambit2.core.io that return Profile

Modifier and Type	Method and Description
Profile	SimpleIOListener.getProperties()

Methods in ambit2.core.io with parameters of type Profile

Modifier and Type	Method and Description
void	SimpleIOListener.setProperties(Profile properties)

Uses of Profile in ambit2.db.processors

Fields in ambit2.db.processors declared as Profile

Modifier and Type	Field and Description
protected Profile<Property>	AbstractDescriptorCalculator.descriptors

Methods in ambit2.db.processors that return Profile

Modifier and Type	Method and Description
Profile<Property>	AbstractDescriptorCalculator.getDescriptors()

Methods in ambit2.db.processors with parameters of type Profile

Modifier and Type	Method and Description
net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>	ProcessorCreateProfileQuery.process(Profile<Property> target)
void	AbstractDescriptorCalculator.setDescriptors(Profile<Property> descriptors)

Uses of Profile in ambit2.db.readers

Constructors in ambit2.db.readers with parameters of type Profile

Constructor and Description
RetrieveGroupedValuesByAlias(Profile aliases)
RetrieveProfileValues(RetrieveProfileValues.SearchMode querymode, Profile profile, boolean chemicalsOnly)
RetrieveProfileValuesAsRow(Profile profile, boolean chemicalsOnly)

Uses of Profile in ambit2.db.reporters

Fields in ambit2.db.reporters declared as Profile

Modifier and Type	Field and Description
protected Profile	AbstractStructureRecordReporter.groupProperties
protected Profile	QueryHeaderReporter.groupProperties
protected Profile	SDFReporter.groupProperties
protected Profile	SmilesReporter.groupProperties
protected Profile<Property>	QueryPacketReporter.template

Methods in ambit2.db.reporters that return Profile

Modifier and Type	Method and Description
Profile	AbstractStructureRecordReporter.getGroupProperties()
Profile	QueryHeaderReporter.getGroupProperties()
Profile	SDFReporter.getGroupProperties()
Profile	SmilesReporter.getGroupProperties()

Methods in ambit2.db.reporters with parameters of type Profile

Modifier and Type	Method and Description
void	QueryHeaderReporter.setGroupProperties(Profile gp)
void	SDFReporter.setGroupProperties(Profile gp)
void	SmilesReporter.setGroupProperties(Profile gp)

Constructors in ambit2.db.reporters with parameters of type Profile

Constructor and Description
AbstractStructureRecordReporter(Profile groupedProperties, Template template)
AbstractStructureRecordReporter(Result record, Profile groupedProperties, Template template)
ARFF3ColReporter(Template template, Profile groupedProperties)
ARFFReporter(Template template, Profile groupedProperties, net.idea.modbcum.i.processors.IProcessor... processors)
CSVReporter(String baseRef, Template template, Profile groupedProperties, String urlPrefix)
CSVReporter(String baseRef, Template template, Profile groupedProperties, String[] folders, SubstanceEndpointsBundle[] bundles, String urlPrefix, boolean includeMol)
PDFReporter(Template template, Profile groupedPrperties)
QueryPacketReporter(Profile<Property> template, int chunkSize)
SDFReporter(Template template, Profile groupedProperties, boolean changeLineSeparator)
SDFReporter(Template template, Profile groupedProperties, boolean molOnly, boolean changeLineSeparator)
StructureListReporter(List<IStructureRecord> record, Profile groupedProperties, Template template)
StructureListReporter(Profile groupedProperties, Template template)
StructureRecordReporter(IStructureRecord record, Profile groupedProperties, Template template)
StructureRecordReporter(Profile groupedProperties, Template template)

Uses of Profile in ambit2.db.reporters.xlsx

Constructors in ambit2.db.reporters.xlsx with parameters of type Profile

Constructor and Description
AbstractXLSXReporter(String baseRef, boolean hssf, Template template, Profile groupedProperties, SubstanceEndpointsBundle[] bundles, String urlPrefix, boolean includeMol)
StructureRecordXLSXReporter(String baseRef, boolean hssf, Template template, Profile groupedProperties, SubstanceEndpointsBundle[] bundles, String urlPrefix, boolean includeMol, String configResource)
SubstanceRecordXLSXReporter(String baseRef, boolean hssf, Template template, Profile groupedProperties, SubstanceEndpointsBundle[] bundles, String urlPrefix)

Uses of Profile in ambit2.db.results

Fields in ambit2.db.results with type parameters of type Profile

Modifier and Type	Field and Description
protected Hashtable<String,Profile<Property>>	StoredQueryTableModel.properties

Methods in ambit2.db.results with parameters of type Profile

Modifier and Type	Method and Description
void	StoredQueryTableModel.setProfile(String key, Profile<Property> profile)
void	MemoryRowsModel.updateProfile(Profile profile)

Uses of Profile in ambit2.db.search.property

Fields in ambit2.db.search.property declared as Profile

Modifier and Type	Field and Description
protected Profile<Property>	ValuesReader.profile

Methods in ambit2.db.search.property that return Profile

Modifier and Type	Method and Description
Profile<Property>	ValuesReader.getProfile()

Methods in ambit2.db.search.property with parameters of type Profile

Modifier and Type	Method and Description
void	ValuesReader.setProfile(Profile<Property> profile)

Uses of Profile in ambit2.db.search.structure

Methods in ambit2.db.search.structure with parameters of type Profile

Modifier and Type	Method and Description
net.idea.modbcum.i.IQueryObject<IStructureRecord>	ProcessorMissingDescriptorsQuery.process(Profile<Property> descriptors)

Uses of Profile in ambit2.dbui

Fields in ambit2.dbui declared as Profile

Modifier and Type	Field and Description
protected Profile<Property>	ProfileEditor.profile

Methods in ambit2.dbui that return Profile

Modifier and Type	Method and Description
Profile<Property>	ProfileEditor.getObject()
Profile<Property>	ProfileEditor.process(Profile<Property> target)

Methods in ambit2.dbui with parameters of type Profile

Modifier and Type	Method and Description
Profile<Property>	ProfileEditor.process(Profile<Property> target)
void	ProfileEditor.setObject(Profile<Property> object)

Uses of Profile in ambit2.dbui.dictionary

Fields in ambit2.dbui.dictionary declared as Profile

Modifier and Type	Field and Description
protected Profile<Property>	DictionaryQueryPanel.profile

Methods in ambit2.dbui.dictionary that return Profile

Modifier and Type	Method and Description
Profile<Property>	DictionaryQueryPanel.getProfile()

Methods in ambit2.dbui.dictionary with parameters of type Profile

Modifier and Type	Method and Description
void	DictionaryQueryPanel.setProfile(Profile<Property> profile)

Uses of Profile in ambit2.descriptors.processors

Methods in ambit2.descriptors.processors that return Profile

Modifier and Type	Method and Description
protected Profile<Property>	DescriptorsFactory.createResult()

Methods in ambit2.descriptors.processors with parameters of type Profile

Modifier and Type	Method and Description
protected void	DescriptorsFactory.addToResult(String name, boolean enabled, int order, Profile<Property> result)

Uses of Profile in ambit2.rest.dataset

Fields in ambit2.rest.dataset declared as Profile

Modifier and Type	Field and Description
protected Profile	DatasetRDFWriter.groupProperties

Methods in ambit2.rest.dataset that return Profile

Modifier and Type	Method and Description
Profile	DatasetRDFWriter.getGroupProperties()

Methods in ambit2.rest.dataset with parameters of type Profile

Modifier and Type	Method and Description
void	DatasetRDFWriter.setGroupProperties(Profile gp)

Constructors in ambit2.rest.dataset with parameters of type Profile

Constructor and Description
DatasetRDFStaxReporter(String prefix, org.restlet.Request request, Template template, Profile groupedProperties)

Uses of Profile in ambit2.ui

Fields in ambit2.ui declared as Profile

Modifier and Type	Field and Description
protected Profile<Property>	AmbitSettingsListener.properties

Methods in ambit2.ui that return Profile

Modifier and Type	Method and Description
Profile<Property>	AmbitSettingsListener.getProperties()

Methods in ambit2.ui with parameters of type Profile

Modifier and Type	Method and Description
void	AmbitSettingsListener.setProperties(Profile properties)

Uses of Profile in ambit2.ui.editors

Fields in ambit2.ui.editors declared as Profile

Modifier and Type	Field and Description
protected Profile<Property>	TemplateEditor.profile

Methods in ambit2.ui.editors that return Profile

Modifier and Type	Method and Description
Profile<Property>	TemplateEditor.getObject()

Methods in ambit2.ui.editors with parameters of type Profile

Modifier and Type	Method and Description
void	TemplateEditor.setObject(Profile<Property> object)

Uses of Profile in ambit2.ui.table

Fields in ambit2.ui.table with type parameters of type Profile

Modifier and Type	Field and Description
protected Hashtable<String,Profile<Property>>	StructureRecordsTableModel.properties

Methods in ambit2.ui.table with parameters of type Profile

Modifier and Type	Method and Description
void	StructureRecordsTableModel.setProfile(String key, Profile<Property> profile)