Uses of Class
ambit2.base.data.Template

Packages that use Template

Package	Description
ambit2.base.data	Base data structures; no chemistry.
ambit2.base.exceptions
ambit2.base.processors.search
ambit2.chebi
ambit2.core.data.model
ambit2.db.processors
ambit2.db.readers
ambit2.db.reporters
ambit2.db.reporters.xlsx
ambit2.db.search
ambit2.db.update.model
ambit2.ml.io
ambit2.namestructure
ambit2.pubchem
ambit2.pubchem.rest
ambit2.rest.dataset
ambit2.rest.model.task
ambit2.rest.rdf
ambit2.search

Uses of Template in ambit2.base.data

Subclasses of Template in ambit2.base.data

Modifier and Type	Class and Description
class	Endpoints
class	PredictedVarsTemplate

Uses of Template in ambit2.base.exceptions

Methods in ambit2.base.exceptions that return Template

Modifier and Type	Method and Description
Template	PropertyNotInTemplateException.getTemplate()

Methods in ambit2.base.exceptions with parameters of type Template

Modifier and Type	Method and Description
void	PropertyNotInTemplateException.setTemplate(Template template)

Constructors in ambit2.base.exceptions with parameters of type Template

Constructor and Description
PropertyNotInTemplateException(Object key, Template template)
PropertyNotInTemplateException(String arg0, Throwable arg1, Object key, Template template)

Uses of Template in ambit2.base.processors.search

Fields in ambit2.base.processors.search declared as Template

Modifier and Type	Field and Description
protected Template	AbstractFinder.profile

Constructors in ambit2.base.processors.search with parameters of type Template

Constructor and Description
AbstractFinder(Template profile, REQUEST request, AbstractFinder.MODE mode)

Uses of Template in ambit2.chebi

Constructors in ambit2.chebi with parameters of type Template

Constructor and Description
ChebiFinder(Template profile, AbstractFinder.MODE mode)

Uses of Template in ambit2.core.data.model

Fields in ambit2.core.data.model declared as Template

Modifier and Type	Field and Description
protected Template	ModelWrapper.dependent
protected Template	Algorithm.input
protected Template	ModelWrapper.predictors

Methods in ambit2.core.data.model that return Template

Modifier and Type	Method and Description
Template	ModelWrapper.getDependent()
Template	Algorithm.getInput()
Template	ModelWrapper.getPredictors()

Methods in ambit2.core.data.model with parameters of type Template

Modifier and Type	Method and Description
void	ModelWrapper.setDependent(Template dependent)
void	Algorithm.setInput(Template input)
void	ModelWrapper.setPredictors(Template predictors)

Uses of Template in ambit2.db.processors

Fields in ambit2.db.processors declared as Template

Modifier and Type	Field and Description
protected Template	ProcessorCreateQuery.profile

Methods in ambit2.db.processors that return Template

Modifier and Type	Method and Description
Template	ProcessorCreateQuery.getProfile()

Methods in ambit2.db.processors with parameters of type Template

Modifier and Type	Method and Description
protected void	ProcessorCreateQuery.insertProfile(IStoredQuery q, Template template)
void	ProcessorCreateQuery.setProfile(Template profile)

Uses of Template in ambit2.db.readers

Methods in ambit2.db.readers with parameters of type Template

Modifier and Type	Method and Description
void	RetrieveTemplateStructure.setFieldname(Template fieldname)

Constructors in ambit2.db.readers with parameters of type Template

Constructor and Description
RetrieveTemplate(Template template)
RetrieveTemplateStructure(Template template)

Uses of Template in ambit2.db.reporters

Fields in ambit2.db.reporters declared as Template

Modifier and Type	Field and Description
protected Template	AbstractStructureRecordReporter.template
protected Template	QueryHeaderReporter.template
protected Template	SDFReporter.template
protected Template	SmilesReporter.template

Methods in ambit2.db.reporters that return Template

Modifier and Type	Method and Description
Template	AbstractStructureRecordReporter.getTemplate()
Template	QueryHeaderReporter.getTemplate()
Template	SDFReporter.getTemplate()
Template	SmilesReporter.getTemplate()

Methods in ambit2.db.reporters with parameters of type Template

Modifier and Type	Method and Description
void	AbstractStructureRecordReporter.setTemplate(Template template)
void	QueryHeaderReporter.setTemplate(Template template)
void	SDFReporter.setTemplate(Template template)
void	SmilesReporter.setTemplate(Template template)
protected List<Property>	CSVReporter.template2Header(Template template, boolean propertiesOnly)
protected List<Property>	QueryHeaderReporter.template2Header(Template template, boolean propertiesOnly)

Constructors in ambit2.db.reporters with parameters of type Template

Constructor and Description
AbstractStructureRecordReporter(Profile groupedProperties, Template template)
AbstractStructureRecordReporter(Result record, Profile groupedProperties, Template template)
ARFF3ColReporter(Template template)
ARFF3ColReporter(Template template, Profile groupedProperties)
ARFFReporter(Template template)
ARFFReporter(Template template, Profile groupedProperties, net.idea.modbcum.i.processors.IProcessor... processors)
CSVReporter(String baseRef, Template template)
CSVReporter(String baseRef, Template template, Profile groupedProperties, String urlPrefix)
CSVReporter(String baseRef, Template template, Profile groupedProperties, String[] folders, SubstanceEndpointsBundle[] bundles, String urlPrefix, boolean includeMol)
PDFReporter(Template template)
PDFReporter(Template template, Profile groupedPrperties)
QueryTemplateReporter(Template template)
SDFReporter(Template template, Profile groupedProperties, boolean changeLineSeparator)
SDFReporter(Template template, Profile groupedProperties, boolean molOnly, boolean changeLineSeparator)
SmilesReporter(boolean writeProperties, SmilesReporter.Mode mode, Template template)
SmilesReporter(boolean writeProperties, Template template)
StructureListReporter(List<IStructureRecord> record, Profile groupedProperties, Template template)
StructureListReporter(Profile groupedProperties, Template template)
StructureRecordReporter(IStructureRecord record, Profile groupedProperties, Template template)
StructureRecordReporter(Profile groupedProperties, Template template)

Uses of Template in ambit2.db.reporters.xlsx

Constructors in ambit2.db.reporters.xlsx with parameters of type Template

Constructor and Description
AbstractXLSXReporter(String baseRef, boolean hssf, Template template, Profile groupedProperties, SubstanceEndpointsBundle[] bundles, String urlPrefix, boolean includeMol)
StructureRecordXLSXReporter(String baseRef, boolean hssf, Template template, Profile groupedProperties, SubstanceEndpointsBundle[] bundles, String urlPrefix, boolean includeMol, String configResource)
SubstanceRecordXLSXReporter(String baseRef, boolean hssf, Template template, Profile groupedProperties, SubstanceEndpointsBundle[] bundles, String urlPrefix)

Uses of Template in ambit2.db.search

Fields in ambit2.db.search declared as Template

Modifier and Type	Field and Description
protected Template	StoredQuery.template

Methods in ambit2.db.search that return Template

Modifier and Type	Method and Description
Template	IStoredQuery.getTemplate()
Template	StoredQuery.getTemplate()

Methods in ambit2.db.search with parameters of type Template

Modifier and Type	Method and Description
void	IStoredQuery.setTemplate(Template template)
void	StoredQuery.setTemplate(Template template)

Uses of Template in ambit2.db.update.model

Methods in ambit2.db.update.model with parameters of type Template

Modifier and Type	Method and Description
protected List<TemplateAddProperty>	CreateModel.processTemplate(Dictionary d, Template t)

Uses of Template in ambit2.ml.io

Fields in ambit2.ml.io declared as Template

Modifier and Type	Field and Description
protected Template	OutputARFF.header

Uses of Template in ambit2.namestructure

Constructors in ambit2.namestructure with parameters of type Template

Constructor and Description
Name2StructureFinder(Template profile, AbstractFinder.MODE mode)

Uses of Template in ambit2.pubchem

Constructors in ambit2.pubchem with parameters of type Template

Constructor and Description
PubchemFinder(Template profile, AbstractFinder.MODE mode)

Uses of Template in ambit2.pubchem.rest

Constructors in ambit2.pubchem.rest with parameters of type Template

Constructor and Description
PubChemRestFinder(Template profile, AbstractFinder.MODE mode, PUGRestRequest.COMPOUND_DOMAIN_INPUT input)

Uses of Template in ambit2.rest.dataset

Fields in ambit2.rest.dataset declared as Template

Modifier and Type	Field and Description
protected Template	DatasetRDFWriter.template

Methods in ambit2.rest.dataset that return Template

Modifier and Type	Method and Description
Template	DatasetRDFWriter.getTemplate()

Methods in ambit2.rest.dataset with parameters of type Template

Modifier and Type	Method and Description
void	DatasetRDFWriter.setTemplate(Template template)
protected List<Property>	DatasetRDFWriter.template2Header(Template template, boolean propertiesOnly)

Constructors in ambit2.rest.dataset with parameters of type Template

Constructor and Description
DatasetRDFStaxReporter(String prefix, org.restlet.Request request, Template template, Profile groupedProperties)
RDFFileWriter(File file, org.restlet.data.Reference appReference, Template template)

Uses of Template in ambit2.rest.model.task

Methods in ambit2.rest.model.task with parameters of type Template

Modifier and Type	Method and Description
protected void	CallableModelCreator.writeAnnotations(Template properties, UpdateExecutor exec)

Uses of Template in ambit2.rest.rdf

Methods in ambit2.rest.rdf with parameters of type Template

Modifier and Type	Method and Description
static void	RDFPropertyIterator.readFeaturesRDF(String uri, Template profile, org.restlet.data.Reference rootRef, String referer)

Uses of Template in ambit2.search

Constructors in ambit2.search with parameters of type Template

Constructor and Description
AllSourcesFinder(Template profile)
AllSourcesFinder(Template profile, net.idea.modbcum.i.processors.IProcessor<String,String> request, AbstractFinder.MODE mode)