Uses of Class
ambit2.db.search.structure.AbstractStructureQuery

Packages that use AbstractStructureQuery

Package	Description
ambit2.db.chemrelation
ambit2.db.processors
ambit2.db.results
ambit2.db.search.structure
ambit2.db.search.structure.byproperty
ambit2.db.simiparity.space
ambit2.db.substance.relation
ambit2.db.update.bundle.chemicals
ambit2.db.update.dataset
ambit2.db.update.fp
ambit2.db.update.structure

Uses of AbstractStructureQuery in ambit2.db.chemrelation

Subclasses of AbstractStructureQuery in ambit2.db.chemrelation

Modifier and Type	Class and Description
class	ReadStructureRelation

Uses of AbstractStructureQuery in ambit2.db.processors

Fields in ambit2.db.processors declared as AbstractStructureQuery

Modifier and Type	Field and Description
protected AbstractStructureQuery	PropertyImporter.query_property

Methods in ambit2.db.processors that return AbstractStructureQuery

Modifier and Type	Method and Description
protected AbstractStructureQuery	RepositoryWriter.getQuery(IStructureRecord record)

Uses of AbstractStructureQuery in ambit2.db.results

Fields in ambit2.db.results declared as AbstractStructureQuery

Modifier and Type	Field and Description
protected AbstractStructureQuery	StoredQueryTableModel.storedResults

Methods in ambit2.db.results that return AbstractStructureQuery

Modifier and Type	Method and Description
AbstractStructureQuery	StoredQueryTableModel.getQuery()

Methods in ambit2.db.results with parameters of type AbstractStructureQuery

Modifier and Type	Method and Description
void	StoredQueryTableModel.setQuery(AbstractStructureQuery query)

Uses of AbstractStructureQuery in ambit2.db.search.structure

Subclasses of AbstractStructureQuery in ambit2.db.search.structure

Modifier and Type	Class and Description
class	ChemicalByQueryFolder Retrieves chemicals from set of datasets, defined in the query table restricted by sessions.title
class	FingerprintsByStatus
class	FreeTextQuery select idchemical,metric from ( (select idchemical,2 as metric from properties join property_values using(idproperty) join property_string using(idvalue_string) join structure using(idstructure) where name like "MA%" and value like "Reaction%" ) union (select idchemical,2 as metric from properties join property_values using(idproperty) join property_string using(idvalue_string) join structure using(idstructure) where value like "MA%" and name like "Reaction%" ) union (select idchemical,1 as metric from properties join property_values using(idproperty) join structure using(idstructure) where name like "MA%") union (select idchemical,1 as metric from property_values join property_string using(idvalue_string) join structure using(idstructure) where value like "MA%") union (select idchemical,1 as metric from properties join property_values using(idproperty) join structure using(idstructure) where name like "Reaction%") union (select idchemical,1 as metric from property_values join property_string using(idvalue_string) join structure using(idstructure) where value like "Reaction%") ) a
class	MissingFingerprintsQuery
class	MissingInChIsQuery
class	NumberQuery<F>
class	QueryAtomEnvironment Similarity via atom environment matrix /query/similarity?search=c1ccccc1O&threshold=0.5&mode=ae
class	QueryByIdentifierWithStructureFallback Calls findByProperty stored procedure
class	QueryDataset src_dataset.name = ?
class	QueryDatasetByID
class	QueryDistance Distance between two atoms, provided as symbols.
class	QueryExactStructure Deprecated. Convert to InChI and use QueryStructure
class	QueryField Search for a structure with property with given name and value
class	QueryFieldAbstract<T,C extends net.idea.modbcum.i.IQueryCondition,NC extends net.idea.modbcum.i.IQueryCondition>
class	QueryFieldMultiple
class	QueryFieldNumeric
class	QueryFunctionalGroups
class	QueryLookupStructure This is a wrapper around QueryStructure , allowing to use IStructureRecord as a parameter
class	QueryMissingDescriptor reads structures, for each there are / or there are not (depending on getCondition) descriptors with given idname and reference title.
class	QueryMissingDistances Reads structures without precalculated pairwise atom distances from the database.
class	QueryMissingProperty
class	QueryPrescreenBitSet First bitset is from structural keys, second from fingerprints
class	QuerySimilarity<F,T,C extends net.idea.modbcum.i.IQueryCondition>
class	QuerySimilarityBitset Tanimoto similarity of BitSet.
class	QuerySimilarityStructure
class	QuerySMARTS Select structures by querying fungroups table by smarts
class	QueryStoredResults
class	QueryStoredResultsByName Retrieve structure collections from query table by name and folder (sessions table)
class	QueryStructure Search for smiles, inchi, formula
class	QueryStructureByID Selects a structure by idstructure
class	QueryStructureByQuality
class	QueryStructureByQualityPairLabel
class	QueryStructureByValueQuality
class	QueryStructureType
class	QueryStrucType

Fields in ambit2.db.search.structure declared as AbstractStructureQuery

Modifier and Type	Field and Description
protected AbstractStructureQuery	QuerySimilarityStructure.query

Uses of AbstractStructureQuery in ambit2.db.search.structure.byproperty

Classes in ambit2.db.search.structure.byproperty with type parameters of type AbstractStructureQuery

Modifier and Type	Class and Description
class	QueryStructureByProperty<Q extends AbstractStructureQuery>

Subclasses of AbstractStructureQuery in ambit2.db.search.structure.byproperty

Modifier and Type	Class and Description
class	QueryStructureByProperty<Q extends AbstractStructureQuery>
class	QueryStructureByPropertyInCompounds
class	QueryStructureByPropertyInDataset
class	QueryStructuresByPropertyInResults

Uses of AbstractStructureQuery in ambit2.db.simiparity.space

Subclasses of AbstractStructureQuery in ambit2.db.simiparity.space

Modifier and Type	Class and Description
class	QueryQMapStructures

Uses of AbstractStructureQuery in ambit2.db.substance.relation

Subclasses of AbstractStructureQuery in ambit2.db.substance.relation

Modifier and Type	Class and Description
class	ChemicalBySubstanceRelation Returns all chemicals which are component of a substance.
class	ReadSubstanceRelation Reads all structures, related to the query substance via substance_relation table

Uses of AbstractStructureQuery in ambit2.db.update.bundle.chemicals

Subclasses of AbstractStructureQuery in ambit2.db.update.bundle.chemicals

Modifier and Type	Class and Description
class	ReadChemicalsByBundle

Uses of AbstractStructureQuery in ambit2.db.update.dataset

Subclasses of AbstractStructureQuery in ambit2.db.update.dataset

Modifier and Type	Class and Description
class	DatasetQueryFieldGeneric<T,C extends net.idea.modbcum.i.IQueryCondition>
class	DatasetQueryFieldNumeric
class	DatasetQueryFieldString

Uses of AbstractStructureQuery in ambit2.db.update.fp

Subclasses of AbstractStructureQuery in ambit2.db.update.fp

Modifier and Type	Class and Description
class	ReadStructuresByFingerprint

Uses of AbstractStructureQuery in ambit2.db.update.structure

Subclasses of AbstractStructureQuery in ambit2.db.update.structure

Modifier and Type	Class and Description
class	ChemicalByDataset idchemical by dataset